genome.fa.s9460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009460.1 Hibiscus syriacus cultivar Beakdansim tig00113722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2853300

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1601 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3082--3115	16	2.1	16	94	0	59	32	26	8	32	1.87
10347--10398	20	2.7	19	82	5	59	26	28	19	25	1.98
13701--14059	68	5.3	68	82	4	431	27	12	11	48	1.75
13697--14051	136	2.6	134	87	3	496	27	12	11	48	1.75
16853--17028	36	4.9	35	86	2	208	20	23	19	36	1.95
21941--21974	16	2.1	16	100	0	68	47	11	11	29	1.76
33486--33558	7	10.1	7	72	16	51	78	5	15	1	1.00
34169--34219	22	2.3	22	93	0	84	37	25	11	25	1.90
35150--36547	106	13.5	105	91	2	2006	33	24	19	22	1.97
36684--36739	28	2.0	28	86	10	80	35	3	0	60	1.14
40087--40126	14	2.9	14	100	0	80	42	7	27	22	1.80
40428--40469	21	2.0	21	86	13	59	38	7	0	54	1.28
41464--41493	9	3.2	9	90	9	51	60	10	0	30	1.30
41464--41497	10	3.5	10	96	4	61	58	8	0	32	1.29
41452--41504	19	2.8	20	78	13	60	54	7	1	35	1.40
41604--41635	7	4.6	7	96	0	55	53	0	0	46	1.00
41596--41645	21	2.3	20	80	12	55	50	0	2	48	1.12
41604--41643	14	2.9	14	88	3	64	50	0	0	50	1.00
45300--45359	31	2.0	31	86	3	86	35	26	6	31	1.82
47811--47890	39	2.1	39	82	0	97	47	8	2	41	1.48
51543--51586	21	2.1	21	100	0	88	20	31	20	27	1.97
58459--58561	53	2.0	52	86	1	143	33	6	13	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61636--61693	27	2.1	28	84	9	75	46	13	17	22	1.83
64112--64151	21	1.9	21	100	0	80	32	15	5	47	1.66
64138--64244	33	3.3	33	92	2	164	32	7	14	45	1.72
64230--64284	13	4.2	13	75	13	58	34	3	12	49	1.59
64480--64536	21	2.7	21	91	0	96	19	26	26	28	1.99
64703--64755	15	3.4	15	75	10	61	33	7	11	47	1.68
93072--93115	23	1.9	23	90	0	70	18	27	27	27	1.98
93341--93384	23	1.9	23	95	0	79	15	29	27	27	1.96
92919--93458	269	2.0	269	98	0	1044	31	13	23	31	1.93
94211--94249	21	1.9	21	89	5	62	25	15	30	28	1.96
94737--94856	55	2.2	55	89	4	179	42	13	17	26	1.86
97607--97631	12	2.1	12	100	0	50	60	8	0	32	1.26
98736--98766	15	2.1	15	100	0	62	32	16	32	19	1.94
99764--99846	32	2.6	32	86	1	114	46	3	2	46	1.33
102229--102266	18	2.1	18	85	9	51	28	2	10	57	1.45
103403--103455	21	2.5	21	81	6	72	20	26	18	33	1.96
103445--103538	21	4.5	21	85	1	118	39	14	21	24	1.91
103527--103641	20	5.7	20	79	6	115	33	26	16	22	1.95
103524--103661	41	3.4	41	81	2	179	36	25	15	22	1.94
103830--103878	22	2.3	21	89	6	73	20	40	14	24	1.89
104134--104183	20	2.5	20	86	0	64	16	18	26	40	1.90
104329--104383	25	2.2	24	78	15	58	20	9	18	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105512--105559	18	2.7	18	93	0	87	27	45	12	14	1.81
106094--106135	20	2.1	20	86	0	57	35	26	21	16	1.94
106105--106160	20	2.8	20	78	2	60	42	21	19	16	1.89
106133--106226	33	2.8	33	90	0	143	50	20	15	13	1.78
106163--106248	19	4.8	19	81	13	110	48	18	18	13	1.80
106260--106318	14	3.9	14	74	20	55	11	16	22	49	1.78
106255--106334	33	2.4	33	93	0	133	12	17	21	48	1.80
106328--106393	20	3.3	20	95	0	114	15	24	25	34	1.94
106318--106416	20	5.0	19	86	3	90	19	20	25	35	1.95
106320--106413	40	2.4	39	82	5	116	18	20	25	36	1.95
108138--108176	14	2.8	14	84	0	51	35	0	17	46	1.49
108312--108361	14	3.0	17	75	24	61	48	18	22	12	1.80
108303--108356	14	3.5	14	75	22	54	46	20	22	11	1.82
108640--108714	20	3.8	20	96	0	123	28	20	28	24	1.99
108647--108755	20	5.4	20	82	6	112	23	19	26	30	1.98
108684--108777	41	2.3	42	80	10	104	20	20	23	36	1.95
108745--108792	20	2.3	21	85	3	62	20	22	14	41	1.89
108993--109026	12	2.9	12	86	4	52	17	41	5	35	1.74
109581--109634	24	2.2	24	90	0	81	22	16	20	40	1.91
109810--109845	12	3.0	12	100	0	72	75	0	25	0	0.81
112075--112205	19	7.7	18	67	25	88	45	19	23	12	1.84
112075--112201	33	3.8	33	93	0	209	44	18	23	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112201--112243	19	2.3	19	84	8	52	16	16	23	44	1.86
112206--112309	19	5.9	19	65	25	68	14	19	19	47	1.83
112217--112309	33	2.8	33	95	0	159	15	19	19	46	1.84
112416--112452	14	2.6	15	87	12	60	48	21	0	29	1.50
113829--113921	42	2.2	42	82	0	114	24	17	37	20	1.93
114139--114323	91	2.0	90	88	6	273	45	18	12	22	1.83
116016--116053	20	1.9	20	88	0	58	42	21	23	13	1.88
116045--116133	14	5.6	14	69	23	61	41	22	24	11	1.86
116024--116150	33	3.8	33	94	1	200	42	22	23	11	1.86
116726--116837	20	5.6	20	84	4	82	23	20	18	37	1.94
116744--116837	41	2.3	40	88	1	134	22	21	17	39	1.92
116718--116887	41	4.2	41	75	10	118	30	18	18	32	1.95
116834--116889	20	2.7	21	80	5	69	42	16	21	19	1.89
116746--116872	61	2.1	61	80	5	141	27	21	17	33	1.95
133343--133390	13	3.5	13	83	10	60	45	10	0	43	1.38
135885--135933	20	2.5	20	93	0	89	42	0	2	55	1.11
136860--136888	2	14.5	2	100	0	58	51	0	0	48	1.00
146173--146261	43	2.1	43	97	0	169	31	31	20	16	1.95
147633--147708	36	2.1	36	85	7	100	48	1	2	47	1.24
148505--148547	18	2.4	18	100	0	86	27	16	25	30	1.97
151220--151260	17	2.3	18	80	16	50	68	7	21	2	1.26
158197--158386	64	3.0	63	80	10	197	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159950--159989	21	1.9	22	90	10	66	15	10	35	40	1.80
160164--160203	10	4.0	10	86	0	53	22	15	7	55	1.65
168264--168398	33	4.2	33	90	2	204	38	36	11	14	1.81
178054--178098	24	1.9	23	86	4	63	37	0	17	44	1.49
179458--179887	76	5.9	69	83	9	296	42	0	7	48	1.38
179458--179806	38	9.6	36	82	9	209	41	1	8	48	1.40
179477--179647	36	4.8	36	82	7	163	42	1	8	48	1.40
179624--179923	38	7.9	38	91	2	428	43	1	6	48	1.35
179460--179923	115	4.2	110	79	11	427	42	1	7	48	1.39
179934--179973	12	3.3	12	82	0	53	25	10	0	65	1.24
180879--180917	19	2.0	20	85	5	53	51	0	35	12	1.40
181074--181116	2	21.5	2	100	0	86	48	0	0	51	1.00
181349--181431	35	2.4	33	78	13	85	14	9	1	74	1.12
181417--181468	26	2.1	24	82	13	61	17	3	5	73	1.19
183909--184108	95	2.1	96	86	3	287	33	16	18	32	1.93
185316--186961	84	19.9	82	79	4	1529	30	23	19	26	1.98
185294--186983	165	10.2	164	81	4	1366	30	23	20	25	1.98
185294--186983	249	6.8	249	82	3	1669	30	23	20	25	1.98
187561--187978	37	11.1	35	78	13	143	41	1	7	50	1.38
187607--188015	37	10.9	37	83	11	410	41	1	6	50	1.37
188025--188076	4	13.0	4	80	15	63	25	1	0	73	0.94
188027--188083	8	7.7	7	78	21	55	24	1	0	73	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187612--187999	158	2.5	157	84	7	428	42	1	6	50	1.36
188026--188083	28	2.0	29	93	3	100	24	1	0	74	0.92
188025--188083	20	3.0	20	83	14	77	25	1	0	72	0.93
189455--189517	30	2.1	30	82	11	76	12	9	0	77	0.98
189624--189667	19	2.3	19	84	0	52	36	4	4	54	1.41
194616--194640	12	2.1	12	100	0	50	56	8	0	36	1.29
196724--196766	22	1.9	23	95	4	79	46	11	13	27	1.78
213298--213374	19	3.8	19	71	17	57	25	32	19	22	1.97
215361--215398	15	2.5	15	91	0	67	55	13	5	26	1.59
219180--219256	23	3.5	22	78	7	84	31	22	16	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14