genome.fa.s9460.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009460.1 Hibiscus syriacus cultivar Beakdansim tig00113722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2853300

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1601 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012181--1012210	14	2.1	14	93	0	51	63	10	0	26	1.26
1014364--1014452	40	2.2	39	77	13	92	48	3	0	48	1.18
1014436--1014532	28	3.6	27	71	18	76	47	0	2	50	1.12
1014457--1014496	20	2.0	21	85	5	55	50	0	2	47	1.14
1014455--1014539	29	2.9	29	71	16	75	45	0	2	51	1.13
1014550--1014614	27	2.4	26	78	12	69	47	1	3	47	1.27
1014550--1014635	27	3.1	27	69	24	63	48	1	2	47	1.22
1014650--1014694	23	2.0	23	86	0	63	53	2	2	42	1.25
1016212--1016274	30	2.1	30	88	5	92	15	20	33	30	1.94
1020025--1020100	21	3.6	21	90	0	125	34	28	18	18	1.95
1020500--1020660	65	2.5	65	83	5	202	29	24	19	26	1.99
1029606--1029666	29	2.1	29	100	0	122	36	9	19	34	1.85
1029738--1029762	12	2.1	12	100	0	50	44	0	16	40	1.47
1031686--1031725	20	2.0	20	85	0	53	32	17	5	45	1.70
1035893--1035938	22	2.1	21	84	4	56	17	0	8	73	1.07
1037835--1037883	19	2.6	19	84	9	57	24	28	20	26	1.99
1041367--1041582	41	5.2	42	77	6	179	32	17	19	30	1.95
1041375--1041536	84	2.0	82	85	4	218	33	16	18	30	1.93
1041384--1041577	41	4.6	42	81	8	198	34	17	18	30	1.94
1051532--1051562	16	1.9	16	93	0	53	38	12	12	35	1.82
1051611--1051663	27	2.0	27	92	0	88	28	16	13	41	1.86
1056145--1056235	37	2.4	39	80	10	116	50	3	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056690--1056728	19	2.1	19	85	0	51	69	0	0	30	0.89
1057490--1057561	30	2.6	27	72	24	67	36	1	4	58	1.26
1057640--1057688	23	2.2	22	85	10	64	59	4	0	36	1.17
1059960--1060013	20	2.7	19	75	8	63	33	31	18	16	1.93
1060063--1060276	20	10.6	20	76	6	198	37	23	18	20	1.94
1060063--1060274	41	5.2	41	89	1	302	38	23	18	20	1.93
1060812--1060898	20	4.3	20	81	5	86	47	19	19	13	1.83
1060812--1060906	40	2.4	40	78	3	102	48	18	20	12	1.80
1060959--1061022	20	3.1	21	77	8	78	10	25	17	46	1.80
1062712--1063091	94	4.1	94	96	1	674	21	12	18	47	1.82
1063194--1063221	14	2.0	14	100	0	56	42	21	28	7	1.79
1063179--1063261	19	4.7	19	76	16	90	45	20	22	10	1.82
1063306--1063372	20	3.3	20	87	0	89	20	17	22	38	1.93
1063856--1063959	21	5.0	21	76	3	93	22	35	19	23	1.96
1063881--1063963	42	2.0	42	83	4	105	21	38	19	20	1.93
1065317--1065352	14	2.6	14	90	0	54	30	0	22	47	1.52
1065454--1065528	33	2.2	34	92	2	125	46	20	20	13	1.83
1065467--1065527	14	3.4	19	72	23	69	49	18	18	14	1.80
1065545--1065639	33	2.8	33	88	3	127	13	20	20	46	1.84
1065617--1065699	20	4.2	19	77	14	87	20	20	21	37	1.95
1065617--1065699	40	2.1	39	84	13	107	20	20	21	37	1.95
1068120--1068173	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068120--1068187	24	2.8	24	84	0	64	38	20	17	23	1.93
1069033--1069100	20	3.4	20	93	0	118	17	20	23	38	1.93
1069097--1069142	21	2.2	21	88	0	65	36	17	28	17	1.92
1069193--1069445	20	12.6	20	79	7	262	19	18	25	36	1.94
1073065--1073116	26	2.1	25	82	7	61	50	3	7	38	1.50
1075858--1075912	27	2.0	27	93	6	94	29	9	16	45	1.78
1077957--1078011	3	18.0	3	78	10	58	38	1	0	60	1.08
1077958--1078033	31	2.5	29	83	12	82	42	1	0	56	1.07
1078050--1078090	21	2.0	21	90	9	66	24	24	24	26	2.00
1079389--1079458	11	6.0	11	72	18	54	28	4	4	62	1.33
1079573--1079852	141	2.0	140	81	7	327	38	8	7	44	1.64
1084664--1084701	2	19.0	2	100	0	76	50	0	0	50	1.00
1084886--1084917	16	2.1	15	94	5	55	78	0	21	0	0.76
1087300--1087613	115	2.7	115	92	0	504	32	13	20	33	1.92
1089758--1089912	54	2.9	53	91	1	238	37	16	22	23	1.93
1090979--1091696	76	9.5	76	98	0	1348	22	20	21	36	1.95
1090979--1091696	379	1.9	379	97	0	1373	22	20	21	36	1.95
1091824--1091884	3	20.0	3	80	9	70	37	1	0	60	1.07
1091818--1091896	34	2.4	31	85	10	95	40	1	0	58	1.06
1091825--1091896	15	4.5	16	82	10	94	40	1	0	58	1.07
1091913--1091953	21	2.0	21	85	9	57	24	24	26	24	2.00
1093434--1093707	141	2.0	139	79	12	303	40	8	6	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101657--1101819	82	2.0	82	95	0	290	39	9	15	36	1.79
1102105--1102170	34	1.9	34	90	0	105	27	21	27	24	1.99
1117999--1118032	14	2.5	14	90	4	52	55	0	0	44	0.99
1119069--1119094	13	2.0	13	100	0	52	61	0	15	23	1.33
1121301--1121373	20	3.4	22	69	23	57	46	5	1	46	1.34
1121302--1121373	22	3.4	21	73	16	67	47	4	1	47	1.30
1121335--1121509	90	2.0	89	94	1	305	45	6	9	38	1.63
1121693--1121720	14	2.0	14	100	0	56	0	14	14	71	1.15
1131063--1131171	21	5.3	21	76	5	107	43	17	22	17	1.88
1131063--1131173	41	2.7	41	94	4	188	42	18	22	17	1.89
1131166--1131238	20	3.7	20	92	0	119	26	28	19	26	1.98
1133096--1133140	18	2.5	18	88	0	72	26	44	15	13	1.83
1133622--1133687	20	3.3	20	80	2	71	39	24	21	15	1.91
1133661--1133751	32	2.8	33	93	3	157	48	21	17	12	1.80
1133677--1133734	14	3.9	14	77	16	62	50	24	15	10	1.75
1133763--1133885	20	6.7	19	76	10	96	13	19	24	43	1.86
1133763--1133866	19	5.7	19	72	18	87	12	21	24	42	1.87
1135734--1135769	14	2.6	14	90	0	54	30	0	22	47	1.52
1135876--1135929	14	3.5	14	77	22	63	48	20	20	11	1.80
1135857--1135934	33	2.4	33	91	0	120	42	21	23	12	1.87
1135953--1136010	20	2.9	20	89	0	89	18	22	20	37	1.94
1137067--1137120	24	2.2	24	90	0	81	24	16	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137289--1137313	12	2.1	12	100	0	50	72	0	28	0	0.86
1138920--1139012	42	2.2	42	84	0	114	24	16	37	21	1.93
1141037--1141135	33	3.0	33	89	1	144	39	26	23	11	1.88
1141012--1141177	20	9.1	19	73	16	109	43	22	21	12	1.85
1141167--1141208	19	2.2	19	91	0	66	14	19	16	50	1.79
1141173--1141239	19	3.5	19	83	2	89	11	14	20	52	1.74
1141756--1141808	20	2.7	20	93	0	88	26	20	28	24	1.99
1141817--1141870	20	2.7	20	97	0	99	25	18	24	31	1.97
1141757--1141873	61	1.9	61	85	0	162	23	17	24	33	1.97
1141757--1141891	61	2.2	61	81	2	155	22	20	24	32	1.98
1145032--1145142	59	1.9	59	85	5	154	38	14	13	33	1.85
1145732--1145834	35	2.9	35	84	2	109	43	22	1	32	1.64
1147453--1147564	35	3.2	35	84	0	143	33	0	22	42	1.60
1148007--1148055	19	2.5	20	83	3	64	34	0	20	44	1.52
1148633--1148658	2	13.0	2	100	0	52	0	50	0	50	1.00
1155219--1155552	20	16.6	19	75	14	151	38	22	14	24	1.91
1155237--1155385	80	1.9	80	81	8	187	36	22	15	24	1.93
1155278--1155538	80	3.2	81	78	12	252	39	21	14	23	1.91
1155337--1155552	21	10.6	21	80	9	191	39	21	13	24	1.90
1155712--1155769	22	2.7	22	82	15	77	18	41	13	25	1.88
1156148--1156199	20	2.6	20	78	0	59	17	13	19	50	1.78
1158202--1158337	64	2.1	64	82	2	157	35	22	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158596--1158657	25	2.4	25	81	7	72	37	12	8	41	1.73
1158982--1159024	21	2.0	21	95	0	77	18	30	25	25	1.98
1165085--1165130	19	2.4	19	88	0	74	32	21	23	21	1.98
1165882--1165943	23	2.7	23	84	0	79	20	24	24	30	1.99
1167049--1167168	63	1.9	63	83	6	154	21	12	34	31	1.91
1167134--1167183	21	2.4	21	82	0	64	22	20	28	30	1.98
1167466--1167584	42	2.8	42	85	9	138	21	32	20	25	1.97
1167466--1167584	21	5.7	21	73	18	97	21	32	20	25	1.97
1169481--1169530	24	2.1	24	81	7	57	40	20	16	24	1.91
1170259--1170298	16	2.5	16	83	0	53	67	0	5	27	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14