Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009579.1 Hibiscus syriacus cultivar Beakdansim tig00116951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6215474

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  29  of  29  ( 3390 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6138482--6138556
38
2.0
38
97
0
141
32
9
2
56
1.45
6138487--6138551
17
3.2
22
63
24
61
32
10
1
55
1.44
6138835--6138878
16
2.7
17
79
13
56
45
25
0
29
1.54
6139050--6139103
22
2.4
23
78
12
67
44
0
1
53
1.11
6139806--6139833
2
14.0
2
100
0
56
50
0
0
50
1.00
6140140--6140187
23
2.1
23
84
0
60
37
12
16
33
1.86
6140614--6140676
23
2.7
23
92
0
99
38
20
4
36
1.74
6140822--6140886
29
2.2
29
82
15
73
43
0
4
52
1.22
6140254--6141305
426
2.5
430
95
1
1893
39
11
7
42
1.69
6141040--6141102
23
2.7
23
92
0
99
38
20
4
36
1.74
6141664--6142833
199
5.9
199
96
0
2150
31
17
14
36
1.90
6142952--6143000
19
2.6
19
93
0
80
57
10
2
30
1.43
6144786--6144851
33
2.0
33
90
0
105
22
48
0
28
1.51
6144885--6144928
21
2.1
21
91
0
70
15
31
11
40
1.83
6147132--6147174
20
2.3
18
85
14
61
20
16
11
51
1.75
6147137--6147183
20
2.4
19
82
10
67
19
17
10
53
1.72
6147317--6147377
20
3.1
19
84
13
79
18
14
11
55
1.68
6147412--6147899
227
2.1
227
95
1
890
39
7
7
44
1.63
6155092--6155184
45
2.0
46
97
2
179
47
17
15
20
1.83
6161132--6161176
21
2.1
22
95
4
83
28
0
13
57
1.36
6162771--6162807
14
2.6
14
95
0
65
43
5
16
35
1.71
6166661--6166725
18
3.7
18
85
4
87
23
35
24
16
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6181561--6181593
16
2.1
16
100
0
66
36
33
18
12
1.88
6189442--6189521
41
2.0
41
92
0
133
30
17
15
37
1.90
6196075--6196111
17
2.2
17
86
13
51
27
5
0
67
1.12
6200600--6200624
12
2.1
12
100
0
50
32
8
36
24
1.84
6201154--6201196
22
2.0
22
90
4
70
30
11
20
37
1.89
6205561--6205595
2
17.5
2
93
0
61
48
0
2
48
1.16
6213526--6213560
5
6.8
5
87
6
52
45
0
0
54
0.99
6213528--6213562
16
2.2
16
94
0
61
48
0
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29

The End!