genome.fa.s9579.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009579.1 Hibiscus syriacus cultivar Beakdansim tig00116951_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6215474

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  4  of  29  ( 3390 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638564--638593	15	2.0	15	100	0	60	26	26	26	20	1.99
642658--642737	9	8.3	9	77	13	70	15	26	31	27	1.95
642657--642735	19	4.1	19	82	11	97	16	24	31	27	1.96
646235--646565	43	7.8	42	83	4	355	23	22	20	33	1.97
646236--646565	84	3.9	85	82	4	389	23	22	20	33	1.97
651873--651898	13	2.0	13	100	0	52	23	7	7	61	1.49
660038--660138	36	2.9	35	88	7	152	40	0	9	48	1.43
660115--660424	37	8.6	37	84	9	358	46	4	5	43	1.47
660430--660485	14	3.8	16	73	17	50	25	1	0	73	0.93
661689--661723	3	11.7	3	87	0	52	28	2	0	68	1.04
661696--661750	15	3.8	14	79	15	58	25	7	0	67	1.16
662170--662223	22	2.4	22	84	3	63	51	12	12	22	1.74
662229--662319	23	3.9	23	73	2	74	46	14	14	25	1.82
662740--662781	11	3.8	11	78	12	50	57	11	14	16	1.66
662790--662828	11	3.5	11	96	0	69	53	12	10	23	1.69
662812--662869	24	2.5	24	83	5	66	46	15	15	22	1.83
662813--662876	24	2.7	23	76	4	65	50	15	14	20	1.78
665521--665613	42	2.2	42	82	0	114	54	7	16	21	1.66
665550--665664	42	2.8	41	81	5	124	53	6	14	24	1.65
665683--665723	20	2.0	20	100	0	82	58	0	14	26	1.37
666151--666290	44	3.2	43	92	4	226	36	26	18	18	1.94
678607--678674	30	2.3	30	75	9	70	60	5	13	20	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684262--684487	103	2.2	103	93	1	391	26	13	23	36	1.92
684496--684561	23	2.9	23	86	0	87	22	24	25	27	2.00
688984--689138	64	2.4	63	76	10	154	34	20	19	25	1.96
689903--690118	101	2.1	102	93	1	371	26	14	23	36	1.93
690134--690199	22	2.9	23	79	4	80	21	27	24	27	1.99
691765--691809	21	2.1	21	83	0	54	31	31	24	13	1.93
692975--693100	31	4.0	31	80	11	141	27	19	19	33	1.96
693086--693304	30	7.3	30	97	0	386	22	22	24	30	1.99
693575--693606	2	16.0	2	93	0	55	46	0	3	50	1.17
698253--698596	171	2.0	171	98	1	672	32	6	21	39	1.80
704159--704211	21	2.5	21	81	6	72	20	26	18	33	1.96
704201--704252	21	2.5	21	87	3	70	38	17	23	21	1.93
704186--704377	41	4.7	41	67	9	113	31	19	19	29	1.96
704262--704326	21	3.1	21	80	4	69	21	21	16	40	1.92
704139--704355	103	2.1	103	82	6	253	29	20	19	30	1.97
704328--704377	20	2.4	21	86	6	75	42	16	22	20	1.89
704201--704377	20	8.6	20	69	13	74	32	18	19	28	1.96
704908--704974	19	3.5	19	79	2	62	49	23	14	11	1.77
704992--705047	14	3.6	14	74	21	58	10	25	25	39	1.87
704975--705071	33	2.9	33	95	1	167	11	24	22	41	1.87
704970--705096	20	7.1	19	70	20	94	12	24	20	42	1.87
707249--707307	21	2.8	21	73	0	64	23	35	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707189--707307	42	2.8	42	79	0	112	22	36	18	22	1.95
708664--708698	14	2.5	14	95	0	61	31	0	25	42	1.55
708824--708880	14	3.7	14	75	20	60	43	21	24	10	1.83
708806--708895	33	2.7	33	89	0	135	43	20	21	15	1.88
708891--709041	19	8.7	19	62	21	62	15	22	19	43	1.88
708895--709021	33	3.9	32	83	8	175	14	22	18	44	1.86
708888--709016	66	2.0	66	95	0	231	16	22	17	44	1.87
711313--711337	12	2.1	12	100	0	50	0	28	0	72	0.86
711511--711565	24	2.3	24	90	0	83	40	23	16	20	1.91
712335--712389	20	2.7	21	82	5	67	40	14	21	23	1.90
712378--712456	20	3.9	20	77	9	70	35	22	18	22	1.96
712679--712746	20	3.4	20	68	8	66	39	22	20	17	1.92
712795--712840	19	2.4	19	96	0	83	17	21	13	47	1.81
714862--715014	20	8.4	19	71	17	74	44	22	18	14	1.86
714937--715060	14	7.9	14	70	22	86	48	21	17	12	1.80
714921--715065	33	4.4	33	97	0	265	47	21	18	12	1.81
715077--715167	32	2.8	33	89	3	139	13	17	21	47	1.82
715152--715206	20	2.8	19	83	8	65	16	23	23	36	1.94
715688--715732	18	2.5	18	88	0	72	13	15	44	26	1.83
717051--717109	20	3.0	20	87	0	73	42	22	18	16	1.89
717373--717416	22	2.0	22	95	0	79	18	15	45	20	1.85
717605--717656	20	2.6	20	87	0	77	28	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717665--717718	20	2.7	20	91	0	90	25	18	22	33	1.97
717789--717829	21	2.0	21	85	0	55	34	29	17	19	1.94
719917--719966	22	2.3	22	92	0	82	44	18	10	28	1.81
725597--725642	12	3.6	12	81	16	56	45	17	19	17	1.85
725603--725643	12	3.1	13	80	19	57	46	14	17	21	1.84
727942--727983	21	2.0	21	90	0	66	30	11	7	50	1.66
727972--728080	33	3.4	33	89	3	161	32	8	13	45	1.73
728268--728299	16	2.0	17	88	11	50	43	21	21	12	1.86
734100--734140	17	2.3	19	80	16	52	63	4	0	31	1.15
735219--735294	21	3.7	21	94	1	127	28	18	32	19	1.96
735357--735414	21	2.8	21	100	0	116	24	18	36	20	1.95
735498--735558	31	2.0	31	93	3	106	45	19	4	29	1.71
737745--737810	34	2.0	33	87	3	96	25	27	16	30	1.97
738178--738253	21	3.7	21	91	1	118	30	18	31	19	1.96
738317--738373	21	2.7	21	91	0	96	26	17	33	22	1.96
738457--738516	30	2.0	30	96	0	111	45	20	5	30	1.72
740693--740758	34	2.0	33	87	3	96	25	27	16	30	1.97
741127--741202	21	3.7	21	94	1	127	28	18	32	19	1.96
741267--741333	13	5.9	13	67	31	55	23	19	37	19	1.94
741265--741343	21	3.8	21	100	0	158	24	18	36	20	1.95
741427--741486	30	2.0	30	96	0	111	45	20	5	30	1.72
743658--743728	34	2.1	33	86	2	97	22	28	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744093--744161	21	3.3	21	93	2	113	28	17	33	20	1.95
744121--744195	34	2.2	34	100	0	150	29	17	34	18	1.94
744155--744223	21	3.3	21	100	0	138	28	18	33	18	1.95
744100--744216	55	2.1	54	96	1	216	29	17	34	18	1.95
744121--744216	34	2.8	34	88	3	104	29	17	34	18	1.94
744286--744343	21	2.8	21	100	0	116	24	18	36	20	1.95
744425--744484	30	2.0	30	96	0	111	45	20	5	30	1.72
744936--744965	14	2.2	14	94	5	53	60	0	33	6	1.23
746720--746778	30	2.0	30	96	0	109	30	5	20	44	1.73
746945--747004	30	2.0	30	96	0	111	30	5	20	45	1.72
747084--747183	8	14.0	8	67	24	55	25	34	16	25	1.95
747084--747182	21	4.7	21	83	12	123	24	34	16	25	1.95
747112--747179	13	5.0	13	70	19	50	27	30	16	25	1.96
747084--747256	20	8.8	20	75	14	110	26	30	17	26	1.97
749810--749931	31	3.9	31	72	5	95	43	8	8	40	1.64
750396--750426	2	15.5	2	100	0	62	51	0	0	48	1.00
750790--750892	33	3.1	32	93	5	170	27	9	19	43	1.82
751313--752009	84	8.4	83	74	7	508	25	19	23	31	1.98
751309--751676	165	2.2	165	83	4	456	24	20	25	30	1.98
751626--752011	165	2.3	166	86	4	535	25	18	24	31	1.98
751331--752000	249	2.7	248	86	3	868	25	19	23	31	1.98
752118--752994	110	8.0	110	89	1	1296	24	16	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757217--757241	3	8.3	3	100	0	50	68	0	0	32	0.90
767838--767888	22	2.3	22	75	21	52	64	5	3	25	1.33
768699--768748	24	2.0	25	92	3	84	36	2	20	42	1.63
770393--770422	2	15.0	2	92	0	51	46	0	3	50	1.18
771752--771792	21	2.0	21	100	0	82	21	14	34	29	1.93
771866--771956	20	4.5	20	79	8	85	31	25	19	23	1.98
771905--771957	20	2.7	20	93	0	88	24	28	20	26	1.99
772514--772555	19	2.2	19	91	0	66	52	26	16	4	1.63
772551--772735	19	10.1	19	74	14	147	11	21	22	44	1.85
772551--772640	39	2.3	38	94	1	153	10	18	23	47	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29