genome.fa.s9608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3252--3281	15	2.0	15	100	0	60	13	46	26	13	1.80
9558--9651	23	4.1	24	73	16	76	36	7	15	40	1.76
10958--11014	27	2.0	26	83	12	69	42	1	0	56	1.10
11035--11117	42	2.0	42	83	4	107	42	1	0	56	1.07
11025--11113	40	2.3	39	80	9	101	42	1	0	56	1.06
11211--11267	17	3.2	16	75	15	51	45	1	1	50	1.22
11217--11318	20	5.1	20	69	17	70	50	1	0	46	1.19
11373--11424	22	2.4	22	78	9	54	51	1	0	46	1.12
11527--11561	14	2.5	13	86	13	52	54	5	2	37	1.39
11534--11561	14	2.0	14	100	0	56	50	7	0	42	1.30
22884--22922	20	2.0	20	94	0	69	23	20	33	23	1.97
22898--23002	42	2.5	41	78	1	102	29	22	21	25	1.99
22889--24005	214	5.2	214	91	2	1747	31	19	15	33	1.93
23552--23652	42	2.4	41	80	6	123	30	21	22	24	1.99
22889--24005	426	2.6	427	91	2	1756	31	19	15	33	1.93
26111--26153	2	22.0	2	95	4	79	48	0	0	51	1.00
30386--30431	20	2.3	20	100	0	92	32	26	4	36	1.76
38429--38506	41	1.9	41	81	5	95	33	14	15	37	1.87
42671--42699	14	2.1	14	93	6	51	82	0	10	6	0.83
42752--42786	18	1.9	18	94	0	61	51	2	8	37	1.47
44121--44157	17	2.2	16	95	4	65	29	5	27	37	1.79
54736--54806	31	2.3	31	87	0	115	30	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56313--56808	119	4.0	126	82	6	476	23	17	13	45	1.84
56580--56612	5	6.8	5	86	6	50	18	3	0	78	0.87
56580--56612	14	2.3	15	89	5	50	18	3	0	78	0.87
56580--56616	19	2.0	18	89	5	56	18	2	0	78	0.87
56804--56848	16	2.8	16	77	9	56	31	24	4	40	1.75
61325--61408	25	3.0	26	77	16	89	77	3	19	0	0.91
61334--61410	40	2.0	40	82	12	97	79	3	16	0	0.88
64565--64806	65	3.7	64	86	4	315	29	19	11	39	1.87
64565--64806	130	1.9	130	86	3	353	29	19	11	39	1.87
69662--70400	139	5.3	139	84	1	892	30	28	16	24	1.97
71455--71692	131	1.8	131	89	3	379	24	15	13	47	1.80
71455--71721	131	2.0	132	86	4	369	24	15	13	46	1.82
71726--71764	5	8.2	5	86	11	55	17	0	2	79	0.84
71735--71759	13	1.9	13	100	0	50	16	0	4	80	0.87
71730--71766	18	2.1	18	100	0	74	16	0	5	78	0.93
71726--71786	28	2.2	28	82	11	72	21	0	6	72	1.07
71484--71983	131	3.7	130	78	10	379	23	14	14	47	1.81
71980--72022	16	2.7	16	96	0	77	27	34	6	30	1.83
72190--72223	16	2.2	16	89	5	52	23	14	5	55	1.61
74879--74946	35	1.9	35	87	0	100	38	17	17	26	1.92
77063--77097	14	2.5	14	90	0	52	40	0	0	60	0.97
82244--82280	16	2.2	18	85	9	51	56	2	2	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85522--85574	20	2.6	20	72	3	52	33	22	15	28	1.94
86413--86438	13	2.0	13	100	0	52	15	23	23	38	1.92
88657--88784	24	5.3	23	79	10	123	24	16	17	42	1.89
88654--88774	48	2.5	48	89	0	188	23	17	17	41	1.90
93220--93325	24	4.4	24	82	0	122	26	16	17	39	1.90
93213--93334	48	2.5	48	86	0	163	25	16	18	40	1.90
93213--93348	24	5.7	23	80	5	110	25	14	17	41	1.88
94503--94553	19	2.6	20	87	3	68	43	3	15	37	1.66
95294--95577	142	2.0	142	97	0	541	41	13	21	24	1.89
95605--95664	30	2.0	31	86	3	86	51	10	8	30	1.64
96798--96827	13	2.3	13	100	0	60	26	26	10	36	1.88
98842--98892	19	2.6	20	90	3	77	43	5	13	37	1.69
99599--99638	20	2.0	21	85	5	55	50	7	17	25	1.72
101944--102018	20	3.8	19	77	8	69	30	29	12	28	1.92
101965--102020	20	2.8	20	88	0	76	28	30	10	30	1.91
102091--102145	20	2.7	21	80	5	69	34	18	9	38	1.82
102133--102249	60	2.0	60	89	0	162	27	21	7	43	1.79
102137--102249	20	5.7	20	76	4	102	27	22	7	42	1.81
103012--103045	12	2.8	12	90	0	50	55	29	0	14	1.40
103171--103224	24	2.2	24	93	0	90	20	18	20	40	1.91
105801--105825	13	1.9	13	100	0	50	40	24	8	28	1.83
105828--105866	20	2.0	20	84	0	51	51	15	12	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105882--105940	20	3.0	20	92	2	93	44	20	10	25	1.83
105989--106041	20	2.7	20	78	0	61	20	11	22	45	1.83
107575--107712	21	6.6	21	87	3	129	24	15	39	21	1.91
107583--107701	42	2.8	42	83	0	148	25	14	40	20	1.90
107862--107895	4	8.5	4	86	0	50	70	2	0	26	1.01
108085--108141	21	2.7	23	81	15	77	36	28	12	22	1.90
108004--108143	63	2.2	63	76	7	149	34	31	11	22	1.90
108022--108152	21	6.2	20	67	11	66	34	32	10	22	1.89
109786--109827	20	2.1	20	90	0	66	50	19	14	16	1.79
109775--109840	34	1.9	34	93	0	114	48	22	15	13	1.80
110350--110405	20	2.8	20	88	0	76	39	10	19	30	1.86
110373--110428	20	2.8	19	79	15	60	42	16	16	25	1.87
110452--110584	40	3.3	41	78	8	119	31	9	26	32	1.89
110482--110584	20	5.0	21	74	8	86	28	9	28	33	1.89
110481--110584	42	2.5	43	81	6	117	28	9	27	33	1.88
112194--112409	84	2.6	83	79	9	190	30	3	12	53	1.55
113037--113078	15	2.7	15	88	3	57	33	0	0	66	0.92
113035--113080	23	2.0	24	86	4	67	30	0	0	69	0.89
113035--113081	8	5.9	8	82	7	60	29	0	0	70	0.88
113033--113102	26	2.7	26	78	12	72	24	2	0	72	0.98
113033--113104	23	3.1	22	80	11	65	23	2	0	73	0.96
113040--113104	17	4.1	15	77	13	58	23	3	0	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118671--118744	22	3.2	23	76	16	73	21	9	0	68	1.17
122563--122728	91	1.8	91	94	0	296	45	12	15	27	1.81
128166--128231	21	3.1	21	82	4	80	33	22	12	31	1.91
133290--133355	28	2.4	28	81	0	78	46	7	10	34	1.67
134684--134760	21	3.7	20	92	3	118	20	36	31	11	1.89
138686--138763	23	3.6	23	68	19	60	48	5	7	38	1.54
138669--138841	38	4.6	37	72	14	131	46	4	8	41	1.54
138669--138841	75	2.3	78	85	6	232	46	4	8	41	1.54
138844--138868	2	12.5	2	100	0	50	52	0	0	48	1.00
138954--139047	5	19.4	5	77	15	74	35	1	4	59	1.24
143489--144000	261	2.0	261	95	0	916	42	13	21	21	1.87
144223--144248	8	3.2	8	100	0	52	23	23	11	42	1.86
144651--144696	24	1.9	24	86	0	65	43	23	10	21	1.84
152279--153409	214	5.4	214	89	4	1724	32	19	16	32	1.94
152738--152837	41	2.5	40	77	8	103	31	22	24	23	1.99
153399--153479	36	2.2	37	85	10	105	24	19	20	34	1.96
154206--154527	125	2.6	125	87	3	443	23	27	15	33	1.95
161275--161326	17	2.7	19	77	20	54	51	3	1	42	1.31
163524--163563	20	2.0	20	85	9	55	12	10	20	57	1.63
164504--164536	13	2.5	13	95	0	57	12	12	48	27	1.76
168009--168039	16	2.0	16	93	6	55	70	0	9	19	1.14
169665--169749	38	2.3	35	84	13	109	38	3	12	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169837--169881	23	2.0	23	90	0	72	44	4	8	42	1.56
169877--169931	22	2.5	22	82	11	67	45	1	3	49	1.30
169877--169931	23	2.4	22	84	6	65	45	1	3	49	1.30
169964--170016	14	3.9	13	82	5	52	37	0	0	62	0.96
181135--181410	95	2.9	95	96	0	498	44	20	11	23	1.84
181176--181329	45	3.3	45	68	15	132	46	20	9	24	1.80
181221--181379	50	3.3	50	69	15	170	42	22	11	24	1.86
184449--184524	36	2.1	36	85	7	100	47	1	3	47	1.29
184670--184707	20	1.9	20	88	0	58	21	26	10	42	1.85
188551--188698	75	2.0	74	84	4	190	23	19	13	43	1.87

Tables:   1   2   3   4   5   6   7