Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 733 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1032247--1032290
20
2.2
20
88
4
63
36
25
0
38
1.56
1033840--1033878
15
2.5
16
91
4
62
64
0
23
12
1.28
1036059--1036129
36
2.0
35
94
2
124
32
5
15
46
1.69
1036898--1036934
16
2.4
16
90
4
58
62
0
24
13
1.31
1037176--1037201
2
13.0
2
100
0
52
50
0
0
50
1.00
1038479--1038514
17
2.1
17
100
0
72
30
16
11
41
1.83
1039018--1039054
16
2.4
16
90
4
58
62
0
24
13
1.31
1040430--1040465
17
2.1
17
100
0
72
30
16
11
41
1.83
1042496--1042543
20
2.5
20
89
3
71
39
25
0
35
1.56
1044107--1044143
16
2.4
16
90
4
58
62
0
24
13
1.31
1047853--1047900
20
2.5
20
89
3
71
39
25
0
35
1.56
1049452--1049488
16
2.4
16
90
4
58
62
0
24
13
1.31
1053160--1053207
20
2.5
20
89
3
71
39
25
0
35
1.56

Tables:   1   2   3   4   5   6   7

The End!