genome.fa.s9608.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487437--487526	40	2.4	37	85	10	114	45	20	20	14	1.85
487504--487543	19	2.1	19	85	4	53	50	15	17	17	1.79
487538--487591	14	3.5	14	77	22	63	11	20	20	48	1.80
487520--487590	33	2.2	33	84	0	88	19	19	21	39	1.93
489165--489256	42	2.2	42	84	1	123	21	14	42	21	1.88
489620--489687	20	3.4	20	89	0	100	36	25	25	13	1.92
489676--489733	14	3.8	14	77	20	62	51	22	15	10	1.73
489659--489733	33	2.2	34	90	2	125	48	22	18	10	1.79
489659--489750	33	2.8	33	83	5	105	47	25	17	9	1.78
489749--489842	33	2.8	33	86	0	134	13	17	21	47	1.81
489770--489826	14	3.7	14	72	20	51	12	14	24	49	1.77
489836--489881	20	2.3	20	88	0	65	15	21	26	36	1.93
490416--490463	18	2.7	18	93	0	87	14	12	45	27	1.81
491777--491835	20	3.0	20	87	0	73	44	22	18	15	1.87
492314--492445	41	3.2	41	81	2	167	22	14	25	37	1.92
492328--492441	20	5.7	20	79	6	113	23	15	27	33	1.95
492335--492463	41	3.2	41	81	5	120	24	16	25	34	1.95
492431--492503	21	3.5	21	92	1	112	19	23	17	39	1.92
492430--492518	41	2.1	42	79	2	99	24	21	17	35	1.95
492493--492545	21	2.5	22	81	6	74	35	18	24	20	1.95
494593--494675	27	3.2	26	70	25	75	38	10	1	49	1.46
494665--494731	32	2.1	32	91	0	107	47	8	1	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506998--507030	17	2.0	17	88	5	50	9	9	12	69	1.36
513232--513320	45	2.0	44	86	6	126	34	13	11	40	1.80
513328--513381	21	2.6	21	77	11	56	44	7	12	35	1.71
514279--514343	31	2.1	31	83	11	80	35	16	3	44	1.64
514602--514664	25	2.5	26	80	17	78	41	6	0	52	1.27
515078--515194	39	3.0	39	78	14	125	51	0	15	32	1.50
515833--516096	131	2.0	132	90	2	415	43	14	11	30	1.82
520269--520306	19	2.0	19	85	10	51	34	5	28	31	1.80
520631--520931	143	2.1	143	83	4	385	22	14	15	47	1.81
520813--520846	4	8.8	4	87	6	52	20	0	2	76	0.92
523305--523690	210	1.8	210	82	2	497	32	20	22	24	1.97
525192--525252	14	4.4	14	76	17	56	75	6	16	1	1.09
525215--525267	27	2.0	27	85	3	72	75	7	13	3	1.15
525243--525297	18	3.0	19	84	5	60	70	9	16	3	1.27
526294--526342	15	3.4	15	70	30	52	34	16	38	10	1.82
526281--526342	28	2.2	28	100	0	124	35	17	35	11	1.86
526871--527177	105	2.9	105	90	3	469	31	15	11	40	1.84
527324--527388	28	2.2	29	79	15	80	35	9	16	38	1.81
527324--527390	29	2.3	30	79	7	84	35	8	16	38	1.80
527382--527534	63	2.4	65	85	7	206	32	11	13	41	1.81
527451--527629	96	1.9	96	84	4	245	31	13	12	42	1.82
527751--527887	36	3.8	36	84	7	161	35	16	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528032--528349	134	2.4	133	82	5	417	26	30	17	24	1.97
529466--529751	139	2.0	140	88	4	425	21	16	15	46	1.84
531114--531143	5	6.0	5	96	0	51	63	0	0	36	0.95
537862--537944	41	2.0	43	88	4	125	54	21	2	21	1.56
539966--540004	5	7.8	5	88	0	60	79	5	0	15	0.90
540399--540534	21	6.5	21	81	8	161	29	25	20	24	1.99
540399--540518	62	1.9	63	89	3	165	30	25	20	23	1.99
540416--540535	62	1.9	62	93	1	204	30	24	20	25	1.99
540543--540827	21	13.6	21	88	4	389	23	22	24	29	1.99
540398--540653	83	3.1	82	81	8	243	26	23	21	27	1.99
541107--541231	21	5.8	23	73	17	117	37	20	20	20	1.94
541100--541240	42	3.3	42	88	1	219	36	21	20	21	1.96
542464--542531	4	17.0	4	78	17	63	73	1	1	23	1.00
542464--542527	13	4.8	13	78	16	53	73	1	1	23	1.01
542478--542531	17	3.2	17	81	5	65	70	1	1	25	1.07
542558--542618	22	2.8	22	97	0	113	37	8	4	49	1.54
542622--542888	35	7.5	35	84	6	333	43	8	2	44	1.49
542621--542884	142	1.9	140	88	3	395	43	9	2	45	1.49
542621--542943	177	1.8	172	85	8	452	44	8	2	43	1.50
554589--554640	8	6.6	8	87	12	81	75	0	0	25	0.81
554567--554639	31	2.4	30	84	6	85	73	0	5	20	1.02
554591--554637	3	16.7	3	82	12	64	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555847--555883	18	2.1	18	89	0	56	72	2	0	24	0.97
555956--556383	35	12.0	35	81	6	416	44	8	3	43	1.52
555956--556378	70	6.0	70	80	7	460	44	8	3	43	1.52
555884--556378	35	13.8	35	78	10	405	44	8	3	42	1.53
555949--556402	107	4.2	110	81	8	368	44	8	3	43	1.52
558278--558315	3	13.0	3	94	5	69	68	0	0	31	0.90
568054--568116	22	2.9	22	81	6	76	26	23	19	30	1.98
568232--568291	15	3.9	16	75	18	65	26	25	11	36	1.90
568225--568282	30	1.9	30	96	0	107	25	25	13	34	1.93
572214--572274	22	2.8	22	87	7	81	27	26	19	26	1.99
572389--572471	30	2.8	30	85	7	114	27	25	12	34	1.91
572422--572480	15	3.9	16	70	18	54	27	25	10	37	1.88
572911--573046	65	2.1	64	86	4	184	27	21	19	32	1.97
572924--573063	65	2.2	64	81	10	160	27	20	20	31	1.97
578819--578922	44	2.4	44	90	0	154	32	21	17	28	1.96
578821--578889	21	3.2	21	64	22	52	31	21	20	26	1.98
579379--579421	13	3.3	13	83	6	52	34	11	11	41	1.78
580636--580691	24	2.2	26	84	9	71	17	0	23	58	1.38
580969--581003	13	2.6	14	86	13	56	45	8	5	40	1.58
581345--581500	65	2.4	64	81	5	172	28	21	17	31	1.97
582824--582941	60	2.0	60	90	6	186	30	22	10	36	1.88
585195--585246	23	2.2	24	83	10	63	11	7	36	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590799--590840	22	1.9	22	90	0	66	30	35	16	16	1.92
592643--592691	26	1.9	26	84	12	66	38	20	0	40	1.53
610533--610595	24	2.7	24	79	18	71	55	6	0	38	1.25
613231--613285	26	2.1	26	83	10	67	47	1	1	49	1.23
613486--613539	17	3.2	17	67	27	51	29	12	14	42	1.83
615770--615809	18	2.2	18	86	0	53	50	2	2	45	1.28
615987--616041	24	2.3	24	87	3	76	41	0	0	58	0.98
616209--616276	27	2.8	23	75	16	73	47	7	4	41	1.51
622167--622220	23	2.3	23	93	0	90	24	18	12	44	1.85
622167--622227	23	2.7	23	80	14	81	21	16	14	47	1.82
636149--636301	30	5.0	31	88	6	206	35	22	21	20	1.96
636478--636524	23	2.0	24	91	4	78	34	21	0	44	1.52
639953--639993	8	5.2	8	82	5	57	34	0	29	36	1.58
640092--640276	93	2.0	91	91	5	300	25	24	16	34	1.95
640182--640641	121	3.7	124	89	5	707	23	24	18	34	1.96
640186--640641	249	1.8	249	90	4	747	23	23	18	34	1.96
641033--641133	34	3.0	34	86	0	148	38	3	3	53	1.38
641653--641725	21	3.5	21	87	7	103	21	27	32	17	1.96
641653--641738	21	4.1	21	83	8	59	25	24	31	18	1.98
641729--641776	21	2.3	21	85	0	60	22	12	39	25	1.89
641790--641844	27	2.0	27	100	0	110	27	7	40	25	1.82
643307--643339	15	2.1	17	88	11	52	69	3	0	27	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643507--643585	30	2.6	31	78	8	90	58	2	0	39	1.12
643507--643576	31	2.3	31	82	7	90	60	1	0	38	1.06
644689--645164	36	13.4	36	79	11	452	44	3	6	44	1.49
646285--646392	29	3.6	29	77	19	87	19	6	0	73	1.11
646375--646437	33	1.9	31	84	12	81	19	7	1	71	1.19
646378--646518	4	35.0	4	69	23	66	21	4	2	71	1.16
646344--646460	45	2.7	42	77	18	116	20	5	0	73	1.07
646378--646517	57	2.5	60	80	13	179	20	4	2	72	1.15
647173--647204	14	2.3	14	100	0	64	43	25	9	21	1.82
651911--651938	14	2.0	14	100	0	56	35	21	7	35	1.81

Tables:   1   2   3   4   5   6   7