genome.fa.s9608.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840260--840311	20	2.5	20	87	3	77	50	19	17	13	1.78
842075--842187	21	5.4	22	72	8	67	22	12	30	34	1.91
842493--842605	21	5.4	21	78	8	122	21	36	19	23	1.95
842487--842605	42	2.8	41	88	2	166	21	36	18	23	1.95
843912--843956	13	3.4	13	81	6	63	24	0	17	57	1.40
844030--844059	14	2.1	14	93	0	51	10	20	26	43	1.83
844043--844127	20	4.3	20	78	3	91	14	18	21	45	1.84
844319--844505	20	9.4	20	83	0	176	12	14	24	48	1.78
844319--844506	60	3.1	60	86	1	225	13	14	23	48	1.79
847117--847170	24	2.2	24	93	0	90	40	16	18	24	1.90
847117--847184	24	2.8	24	84	0	64	38	16	17	27	1.91
848110--848282	20	8.6	20	68	14	63	30	13	22	34	1.92
848203--848258	20	2.8	21	86	5	71	21	16	25	37	1.93
848252--848342	20	4.5	20	82	8	96	24	15	20	39	1.91
848333--848399	20	3.3	20	67	8	64	17	14	31	35	1.91
848331--848424	40	2.3	40	96	0	170	18	14	31	35	1.91
848342--848406	20	3.2	20	65	8	60	21	13	30	33	1.92
848353--848420	20	3.4	20	70	8	66	20	14	32	32	1.93
864906--864974	23	3.0	23	86	0	93	24	27	27	20	1.99
864990--865305	103	3.1	103	96	0	578	36	23	13	26	1.92
870024--870050	2	13.5	2	100	0	54	48	0	0	51	1.00
870776--870879	34	3.1	34	100	0	208	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870923--870956	14	2.4	14	95	0	59	58	0	5	35	1.22
871072--871105	13	2.5	14	85	9	52	55	2	5	35	1.39
871791--871856	29	2.3	26	80	19	78	31	6	13	48	1.67
875289--875344	28	2.1	27	83	9	71	60	0	1	37	1.07
876569--876600	14	2.1	16	88	11	50	53	3	0	43	1.16
876576--876631	16	3.5	16	85	7	69	55	0	0	44	0.99
884391--884474	31	2.7	31	82	10	100	70	4	17	7	1.28
886060--886102	18	2.4	18	88	7	61	25	9	0	65	1.22
892259--892346	45	1.9	47	83	4	117	31	20	11	36	1.88
894466--894567	32	3.2	32	81	12	113	26	19	21	32	1.97
894484--894593	32	3.5	31	80	10	116	24	17	25	32	1.96
895864--895901	19	2.0	19	94	0	67	44	21	13	21	1.85
896198--896305	56	1.9	55	80	15	125	56	3	1	37	1.28
896425--896450	2	13.0	2	100	0	52	50	0	0	50	1.00
897519--897550	14	2.1	16	88	11	50	53	3	0	43	1.16
898239--898332	33	2.8	33	91	0	152	46	11	10	30	1.74
900092--900122	13	2.4	13	94	0	53	41	9	6	41	1.63
901337--901364	13	2.2	13	100	0	56	35	21	0	42	1.53
902927--902963	15	2.4	16	90	4	58	64	0	21	13	1.27
903196--903237	2	21.5	2	95	4	77	50	0	0	50	1.00
908083--908186	31	3.4	31	86	0	154	13	25	30	29	1.94
908046--908182	62	2.2	62	86	0	184	13	25	29	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910033--910063	13	2.4	13	94	0	53	41	9	6	41	1.63
912965--912995	2	16.0	2	93	6	55	51	0	0	48	1.00
919254--919322	31	2.2	31	92	5	113	11	24	34	28	1.91
922203--922248	20	2.3	20	88	3	67	34	28	0	36	1.58
925485--925509	12	2.1	12	100	0	50	40	24	16	20	1.91
930118--930142	12	2.1	12	100	0	50	40	24	16	20	1.91
932640--932687	20	2.5	20	86	3	62	41	25	0	33	1.55
933806--934555	371	2.0	371	97	0	1421	42	10	15	32	1.79
934617--934653	16	2.4	16	90	4	58	67	0	21	10	1.21
934899--934924	2	13.0	2	100	0	52	50	0	0	50	1.00
935381--935431	26	2.0	26	84	0	66	29	11	3	54	1.54
935437--935516	40	2.0	41	80	11	94	28	3	3	63	1.29
937785--937892	22	4.8	21	67	26	53	30	2	2	63	1.22
937783--937886	47	2.2	44	79	17	104	29	2	2	64	1.22
941938--942006	36	1.9	36	90	0	111	43	18	8	28	1.80
942721--942773	6	8.5	6	83	8	70	15	16	11	56	1.67
946040--946086	7	6.6	7	95	4	85	74	0	25	0	0.82
946030--946086	22	2.6	22	88	8	89	71	0	28	0	0.86
949333--949476	75	1.9	74	85	1	198	31	16	21	30	1.95
950573--950702	24	5.5	24	80	7	140	41	18	13	26	1.87
954849--954924	22	3.5	21	85	8	100	38	13	14	34	1.85
955625--955746	36	3.4	34	69	15	93	27	18	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955619--955761	73	2.0	73	89	8	220	30	17	13	39	1.88
955660--955764	36	2.9	35	71	18	90	30	18	15	36	1.91
955619--955777	73	2.2	73	85	8	200	31	18	11	38	1.87
955777--956226	224	2.0	225	86	3	640	36	14	22	26	1.92
956136--956488	139	2.6	140	81	7	393	40	14	18	26	1.90
956706--956784	3	26.3	3	82	14	101	30	1	1	67	1.07
958127--958207	41	2.0	41	85	9	112	28	3	3	64	1.28
958147--958210	22	3.0	21	72	21	62	26	4	3	65	1.27
958439--958470	2	16.5	2	93	6	57	50	0	0	50	1.00
961027--961072	20	2.3	20	88	3	67	39	23	0	36	1.55
962896--962935	8	4.8	9	87	9	50	52	2	0	45	1.14
966369--966408	14	2.9	14	88	0	62	45	27	10	17	1.80
967429--967476	20	2.5	20	86	3	62	37	25	0	37	1.56
968984--969016	15	2.2	15	89	10	50	63	0	24	12	1.28
969253--969278	2	13.0	2	100	0	52	50	0	0	50	1.00
971184--971290	20	5.3	20	81	10	128	32	26	18	22	1.97
971173--971310	41	3.4	41	80	6	154	36	24	17	21	1.95
971444--971477	12	2.9	12	86	4	52	17	41	5	35	1.74
971626--971683	20	2.9	20	94	0	98	39	24	20	15	1.91
971711--971756	19	2.4	19	100	0	92	15	19	17	47	1.82
971896--971932	14	2.6	14	86	0	56	48	21	0	29	1.50
972462--972611	75	2.0	75	100	0	300	41	24	9	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973268--973315	20	2.4	20	86	6	62	39	27	14	18	1.90
973609--973645	19	2.1	19	85	10	51	32	2	48	16	1.60
973808--973932	20	6.3	20	80	10	114	25	18	24	31	1.98
973821--973936	60	1.9	61	85	5	164	24	18	23	34	1.96
975937--975984	20	2.5	20	89	3	71	39	25	0	35	1.56
979136--979248	50	2.3	50	96	1	210	38	21	12	28	1.89
979305--979478	84	2.1	83	97	2	330	31	13	22	32	1.93
981334--981381	20	2.5	20	89	3	71	39	25	0	35	1.56
984563--984674	49	2.3	49	100	0	224	39	21	12	26	1.89
986682--986729	20	2.5	20	89	3	71	39	25	0	35	1.56
986795--986843	24	2.0	25	96	4	91	46	28	4	20	1.68
990492--990784	146	2.0	148	96	2	547	25	27	13	32	1.94
992150--992196	20	2.5	19	86	6	60	40	23	0	36	1.55
993477--993513	16	2.4	16	90	4	58	62	0	24	13	1.31
994214--994283	35	2.0	35	97	2	133	32	30	17	20	1.95
997220--997267	20	2.5	20	89	3	71	39	25	0	35	1.56
998826--998862	16	2.4	16	90	4	58	62	0	24	13	1.31
1001606--1001630	10	2.5	10	100	0	50	36	0	0	64	0.94
1002568--1002615	20	2.5	20	89	3	71	39	25	0	35	1.56
1003668--1003712	23	1.9	24	82	13	58	53	6	8	31	1.58
1004173--1004209	16	2.4	16	90	4	58	62	0	24	13	1.31
1004448--1004484	2	19.0	2	94	5	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007940--1007987	20	2.5	20	89	3	71	39	25	0	35	1.56
1007997--1008034	16	2.4	16	95	4	69	50	10	5	34	1.59
1009756--1009797	2	21.0	2	100	0	84	50	0	0	50	1.00
1013177--1013224	20	2.5	20	86	3	62	37	25	2	35	1.68
1018331--1018400	24	3.0	24	76	2	79	28	15	17	38	1.90
1022273--1022347	31	2.4	31	84	4	89	13	21	30	34	1.92
1022373--1022442	31	2.3	30	87	7	104	14	27	28	30	1.95
1023436--1023475	20	2.0	20	95	0	71	45	5	17	32	1.70
1026701--1026737	16	2.4	16	90	4	58	62	0	24	13	1.31
1026976--1027020	2	23.5	2	91	8	76	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7