genome.fa.s9608.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192280--192317	18	2.1	18	90	0	58	71	10	15	2	1.25
198810--199136	170	1.9	168	83	4	417	39	9	14	37	1.77
201771--201885	32	3.6	32	83	4	126	38	13	16	32	1.87
205285--205324	20	2.0	21	90	5	64	35	12	27	25	1.92
206191--206258	21	3.1	21	82	4	82	38	27	8	25	1.85
206264--206359	21	4.6	21	73	2	77	40	20	14	23	1.90
206762--206793	7	4.9	7	85	14	50	56	15	0	28	1.40
211532--211575	20	2.3	19	84	7	54	27	15	36	20	1.93
211538--211575	20	1.9	20	88	0	58	28	18	31	21	1.97
214645--214713	22	3.1	22	83	4	77	21	20	23	34	1.96
218468--218592	22	5.6	22	66	10	65	36	24	12	26	1.92
221762--221820	18	3.1	18	81	11	64	30	8	10	50	1.66
222032--222088	22	2.6	22	78	10	71	29	24	21	24	1.99
222083--222117	12	2.8	12	86	4	52	31	34	0	34	1.58
222344--222385	20	2.1	20	95	0	75	40	45	4	9	1.58
222601--222670	33	2.1	33	86	5	97	34	15	27	22	1.95
224797--224902	57	1.9	55	86	9	153	40	12	6	40	1.69
225609--225684	22	3.5	22	98	0	143	30	25	17	27	1.97
225648--225719	35	2.1	34	89	2	108	30	27	12	29	1.93
225682--225743	22	2.8	22	82	4	63	32	25	12	29	1.93
225626--225738	57	2.0	56	87	1	163	30	27	14	28	1.95
225695--225743	22	2.3	22	85	3	64	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226616--226722	45	2.3	46	90	4	164	31	18	19	29	1.96
226663--226806	65	2.2	64	83	9	168	26	18	22	32	1.97
229448--229499	20	2.6	20	96	0	95	19	25	26	28	1.98
229487--229568	23	3.6	22	75	8	76	24	21	28	25	1.99
233889--233922	15	2.5	13	86	13	50	0	35	8	55	1.31
235353--235531	64	2.8	64	78	7	193	30	19	20	29	1.97
235390--235531	65	2.2	64	82	6	171	31	18	19	30	1.96
239087--239145	22	2.7	22	89	0	91	28	28	16	25	1.97
239109--239180	35	2.1	34	86	2	99	30	29	12	27	1.93
239143--239204	22	2.8	22	90	4	90	33	24	14	27	1.94
239609--239680	33	2.2	33	84	2	90	34	15	27	22	1.94
243361--243398	6	6.3	6	100	0	76	65	0	0	34	0.93
245088--245133	20	2.4	20	82	17	62	30	19	26	23	1.98
245186--245232	20	2.5	19	86	6	60	29	21	21	27	1.98
245195--245232	20	1.9	20	94	0	67	28	26	21	23	1.99
245516--245577	23	2.7	23	97	2	117	22	17	22	37	1.94
245520--245597	22	3.5	22	91	1	111	21	17	23	37	1.94
245564--245623	22	2.7	22	84	2	66	28	18	16	36	1.93
247309--247351	18	2.4	18	96	0	77	39	25	0	34	1.56
250123--250163	22	1.9	21	90	5	64	36	34	2	26	1.70
250488--250526	11	3.5	11	100	0	78	74	7	10	7	1.22
250479--250544	22	2.8	23	81	9	89	75	4	13	6	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261696--261737	8	4.8	9	82	11	52	0	7	11	80	0.88
261696--261737	17	2.4	18	92	4	68	0	7	11	80	0.88
264080--264120	22	1.9	21	90	5	64	26	2	34	36	1.70
268386--268544	42	3.9	42	74	6	132	30	26	13	29	1.94
268385--268540	20	7.7	20	72	9	109	29	26	13	30	1.94
268566--268615	20	2.5	20	90	0	73	24	14	12	50	1.76
268592--268641	26	1.9	26	83	0	64	34	16	12	38	1.85
268732--268786	22	2.5	22	87	0	83	18	47	16	18	1.83
269127--269177	20	2.5	20	93	0	93	49	19	13	17	1.80
270806--270845	18	2.2	18	95	0	71	27	32	22	17	1.96
270764--270880	60	2.0	60	84	0	153	25	38	15	20	1.92
270995--271047	21	2.5	21	84	6	72	22	15	28	33	1.94
271117--271162	21	2.2	21	92	0	74	17	15	30	36	1.91
271117--271170	21	2.6	21	87	0	63	16	16	31	35	1.92
271258--271303	4	11.5	4	80	0	56	26	2	4	67	1.21
271437--271590	42	3.7	42	71	6	132	22	36	14	26	1.93
271437--271590	21	7.3	21	81	4	116	22	36	14	26	1.93
272997--273032	16	2.2	16	90	0	54	19	0	13	66	1.24
273414--273454	12	3.4	12	89	0	64	17	0	24	58	1.38
273421--273455	6	5.8	6	93	0	61	17	0	20	62	1.32
276203--276237	17	2.1	17	100	0	70	37	22	17	22	1.94
277303--277381	23	3.5	23	68	23	60	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281432--281506	23	3.3	23	92	7	120	22	38	18	20	1.93
281553--281607	20	2.8	20	88	0	83	20	34	20	25	1.96
283956--284051	48	2.0	48	100	0	192	31	10	12	45	1.76
286511--286535	12	2.1	12	100	0	50	0	28	0	72	0.86
286722--286787	24	2.8	24	97	0	123	34	19	24	21	1.96
286729--286801	24	3.0	24	89	0	74	35	21	20	21	1.96
286913--286946	12	2.8	12	90	0	50	14	0	29	55	1.40
287711--287739	15	1.9	15	100	0	58	24	6	27	41	1.80
287722--287880	40	3.9	39	72	9	113	33	11	23	31	1.90
287728--287880	80	1.9	81	81	4	184	32	11	23	32	1.91
287921--287965	21	2.2	21	88	4	65	35	17	22	24	1.95
287976--288028	20	2.6	21	79	8	56	32	9	24	33	1.87
287991--288049	20	3.0	21	80	14	63	28	10	28	32	1.90
287813--288049	121	1.9	123	84	6	320	31	13	24	30	1.93
293250--293373	64	1.9	64	82	9	155	39	18	16	25	1.91
293756--293830	29	2.6	29	95	2	134	42	16	22	18	1.88
296162--296225	32	2.0	32	100	0	128	34	6	21	37	1.79
301468--301507	21	1.9	21	89	0	62	25	40	25	10	1.86
309600--309671	36	2.0	36	100	0	144	30	30	19	19	1.96
309918--309963	19	2.6	17	77	12	56	15	8	32	43	1.77
311871--312011	37	3.9	37	74	14	157	50	6	7	35	1.57
314431--314455	12	2.1	12	100	0	50	28	40	8	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317363--317670	154	2.0	154	100	0	616	26	22	23	27	2.00
318336--318369	17	2.1	16	88	5	50	14	8	0	76	1.01
324511--324553	20	2.1	21	87	8	63	18	13	0	67	1.23
324510--324559	20	2.5	20	75	15	59	18	18	0	64	1.30
331783--331862	40	2.0	40	97	0	151	23	20	31	25	1.98
332358--332390	16	2.1	16	100	0	66	57	24	12	6	1.57
332482--332526	13	3.4	13	87	3	54	62	15	8	13	1.54
332490--332529	13	3.1	13	88	0	62	62	12	7	17	1.52
333253--333345	20	4.7	20	81	10	118	36	20	20	22	1.95
333212--333357	40	3.7	40	81	9	145	32	22	19	26	1.97
333253--333382	60	2.2	59	86	4	172	34	22	20	22	1.97
333292--333396	20	5.3	20	85	6	115	31	24	20	23	1.98
333272--333396	40	3.2	40	87	4	146	32	23	20	24	1.98
336707--336820	20	5.7	20	93	2	185	35	24	21	17	1.95
336997--337033	14	2.6	14	86	0	56	48	21	0	29	1.50
338415--338526	42	2.7	42	76	5	111	22	19	37	20	1.94
339006--339210	20	10.4	20	84	10	280	39	23	20	15	1.91
339255--339293	20	2.0	20	94	0	69	20	20	17	41	1.91
339286--339329	14	3.1	14	80	0	52	11	15	22	50	1.76
339314--339372	20	3.0	20	94	0	100	16	18	22	42	1.89
341253--341379	20	6.4	20	79	8	127	43	22	18	15	1.88
341253--341379	40	3.2	40	81	5	159	43	22	18	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341749--341814	22	3.0	22	93	0	114	21	13	39	25	1.90
342010--342066	20	2.8	20	100	0	114	21	19	19	40	1.92
342059--342105	21	2.2	20	85	10	67	36	17	25	21	1.94
350657--350689	16	2.1	16	94	0	57	27	24	9	39	1.85
351349--351374	12	2.2	12	100	0	52	15	15	15	53	1.73
351567--351651	29	2.9	29	98	0	161	11	37	30	20	1.88
351669--351728	23	2.6	23	83	0	75	10	35	26	28	1.89
351772--351829	29	2.0	29	86	0	80	24	27	34	13	1.93
352500--352636	12	11.5	11	68	14	67	40	0	1	56	1.13
352540--352624	23	3.5	23	91	6	125	47	0	1	51	1.08

Tables:   1   2   3   4   5   6   7