genome.fa.s9608.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009608.1 Hibiscus syriacus cultivar Beakdansim tig00116994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1053610

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352563--352690	63	2.0	64	95	4	233	44	0	1	53	1.09
352513--352666	86	1.8	82	91	5	254	43	0	1	55	1.08
352505--352716	85	2.5	84	83	8	250	42	0	1	55	1.15
352563--352690	64	2.0	62	92	4	177	44	0	1	53	1.09
352685--352746	19	3.3	19	78	15	58	37	1	0	61	1.06
352985--353033	23	2.2	23	85	10	66	65	2	2	30	1.15
353207--353266	31	1.9	31	86	0	84	43	11	5	40	1.63
353623--354510	8	108.4	8	64	26	148	37	6	2	52	1.42
353620--354287	36	18.7	36	68	23	243	38	6	2	52	1.40
353667--354306	22	29.2	22	72	21	226	38	6	2	52	1.41
353620--354400	77	9.5	78	70	22	332	37	6	2	52	1.42
353872--354516	2	319.5	2	63	24	105	38	6	2	52	1.43
353654--354292	7	94.2	6	68	19	131	38	6	2	52	1.40
353767--354305	47	11.9	44	73	20	265	38	7	2	51	1.43
354088--354281	73	2.7	72	84	14	246	39	6	2	51	1.40
353623--354516	14	63.4	14	68	22	244	37	6	2	52	1.42
353880--354400	203	2.5	204	80	12	522	37	7	2	52	1.43
354295--354506	85	2.5	84	87	6	245	37	5	4	52	1.45
354509--354550	22	2.0	21	90	9	68	47	4	0	47	1.23
355328--355362	13	2.7	13	90	0	61	8	17	34	40	1.80
362928--362960	17	1.9	17	93	0	57	15	12	39	33	1.84
362995--363108	32	3.6	32	69	13	81	26	11	21	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368555--368675	64	1.9	64	86	1	172	23	20	26	28	1.99
369355--369585	2	117.0	2	64	22	62	48	3	3	45	1.36
369355--369584	13	17.4	13	69	20	76	48	3	3	44	1.36
369659--369766	20	5.2	20	66	21	60	45	0	27	26	1.54
369699--369768	19	3.6	19	75	11	79	42	0	30	27	1.56
369967--370119	6	24.8	6	78	10	157	0	20	50	29	1.48
369975--370059	4	21.8	4	83	4	111	0	24	50	24	1.49
369967--370119	46	3.2	46	85	3	207	0	20	50	29	1.48
369965--370113	20	7.2	20	78	4	145	0	20	50	29	1.48
370057--370134	6	13.0	6	90	0	66	0	11	48	39	1.39
370388--370430	14	3.1	14	75	0	50	44	20	2	32	1.65
370388--370428	21	2.0	21	85	0	55	43	21	2	31	1.66
370379--370455	28	2.7	27	78	7	75	45	27	2	24	1.66
370940--371021	25	3.3	25	83	6	96	50	7	1	41	1.38
370934--370994	2	30.0	2	79	9	61	49	6	1	42	1.38
370466--371608	568	2.0	557	88	4	1704	43	10	8	37	1.70
371827--371873	14	3.7	14	71	26	50	51	4	0	44	1.21
371824--371874	23	2.2	24	96	3	95	49	3	0	47	1.20
372146--372210	16	4.1	16	81	0	76	41	10	23	24	1.86
374250--374283	15	2.3	15	90	5	52	23	14	23	38	1.92
374390--374463	16	4.6	16	98	0	139	35	18	8	37	1.81
379032--379130	2	49.5	2	100	0	198	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379760--380130	65	5.7	65	83	5	446	33	21	15	29	1.94
379760--380134	129	2.9	130	86	4	533	33	21	15	29	1.94
387979--389433	726	2.0	726	97	0	2766	29	21	17	31	1.96
395239--395300	24	2.6	24	89	0	88	33	19	22	24	1.97
395308--395401	23	4.1	23	77	0	98	37	27	17	18	1.92
395308--395409	46	2.2	46	83	0	123	37	26	18	17	1.93
398998--399073	29	2.6	29	80	0	89	44	25	6	23	1.77
399135--399189	10	5.6	10	81	10	69	34	30	20	14	1.92
401491--401522	13	2.5	13	94	0	55	15	18	50	15	1.79
401525--401579	10	5.6	10	85	10	78	34	32	21	10	1.89
401525--401579	19	2.8	20	84	13	78	34	32	21	10	1.89
408919--408972	23	2.5	21	80	13	65	14	16	11	57	1.65
412658--412710	26	2.0	26	100	0	106	50	11	11	26	1.71
415920--415956	20	1.9	19	89	10	58	45	10	24	18	1.81
416106--416137	15	2.1	15	94	0	55	56	0	0	43	0.99
417709--417760	21	2.4	22	75	12	54	57	28	5	7	1.50
418572--418615	23	1.9	23	100	0	88	18	6	52	22	1.69
421024--421097	15	4.8	15	78	8	60	77	4	18	0	0.93
421015--421117	29	3.5	29	84	10	129	76	4	17	0	1.01
421008--421091	15	5.9	13	72	24	55	75	5	17	1	1.07
421018--421123	26	4.0	25	74	17	72	75	4	18	0	1.03
421022--421130	13	8.9	12	72	16	55	76	4	18	0	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424007--424186	67	2.7	66	85	1	234	29	17	11	41	1.84
424206--424750	138	4.0	137	82	4	589	27	28	15	27	1.96
424937--424999	3	21.0	3	100	0	126	33	0	0	66	0.92
427165--427294	64	2.0	64	100	0	260	31	16	7	44	1.75
430878--430952	37	2.0	37	92	0	123	25	20	20	34	1.96
430850--431138	42	7.0	42	78	10	274	24	20	19	35	1.96
430801--431133	85	4.0	84	78	11	319	26	21	18	34	1.95
434538--434573	2	18.0	2	100	0	72	50	0	0	50	1.00
437311--437343	3	11.0	3	100	0	66	33	0	33	33	1.58
452538--453060	263	2.0	260	98	1	1019	34	19	18	27	1.95
457645--457688	15	2.9	15	100	0	88	61	0	38	0	0.96
457644--457717	15	4.4	17	82	17	77	63	0	35	1	1.03
457645--457715	34	2.2	30	85	9	88	63	0	35	1	1.03
457662--457705	19	2.3	20	84	7	56	65	0	31	2	1.05
458256--458310	17	3.1	17	80	14	74	43	0	7	49	1.30
458262--458310	20	2.7	20	84	12	61	36	0	8	55	1.30
458516--458547	16	2.0	16	93	0	55	40	18	3	37	1.67
458570--458638	20	3.4	20	74	9	68	49	2	1	46	1.25
461868--461905	20	1.9	20	88	0	58	42	7	5	44	1.56
462010--462155	65	2.3	65	80	10	149	39	4	9	46	1.56
462449--462477	15	1.9	15	100	0	58	34	0	10	55	1.34
462506--462582	24	3.4	22	70	17	59	40	2	7	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462543--462590	11	4.2	11	76	10	51	45	2	6	45	1.40
462518--462595	24	3.8	20	74	22	63	43	2	6	47	1.42
462530--462586	24	2.4	23	88	5	78	42	3	8	45	1.52
462620--462659	16	2.5	16	91	0	62	47	2	7	42	1.45
462637--462680	22	2.0	22	90	0	70	38	6	11	43	1.67
462709--462748	17	2.5	15	88	8	53	45	0	2	52	1.14
465389--465701	112	2.8	112	84	0	376	32	15	21	31	1.94
465633--465739	48	2.2	48	83	5	144	37	12	21	28	1.89
471094--471146	22	2.4	22	83	0	61	43	20	13	22	1.86
475791--475834	4	11.0	4	90	0	70	52	22	0	25	1.48
475882--475921	20	2.1	19	90	4	62	0	30	0	70	0.88
475885--475933	15	3.5	14	89	8	73	0	30	0	69	0.89
477884--477929	22	2.1	22	100	0	92	32	8	13	45	1.73
480499--480715	21	10.5	21	71	6	95	29	19	19	31	1.96
480526--480798	41	6.7	41	75	6	187	35	18	19	27	1.95
480541--480798	61	4.2	60	71	9	198	36	18	19	26	1.94
480705--480816	20	5.6	20	79	4	118	39	20	18	21	1.93
481026--481078	27	1.9	27	84	3	70	39	32	7	20	1.81
481331--481415	19	4.7	19	72	20	74	45	23	20	10	1.81
481416--481578	33	4.9	33	96	0	272	11	24	21	42	1.85
481416--481603	14	10.8	19	68	24	94	11	23	20	44	1.84
483754--483820	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483702--483820	42	2.8	42	81	5	107	22	36	18	22	1.95
485173--485208	14	2.6	14	95	0	63	30	0	25	44	1.54
485315--485406	19	5.4	19	66	24	78	46	17	19	16	1.84
485315--485410	33	2.9	33	88	0	156	45	17	19	16	1.85
485832--485885	24	2.2	24	90	0	81	40	20	16	22	1.91
486688--486753	19	3.6	19	74	10	66	50	28	15	6	1.67
487102--487153	21	2.5	21	87	3	70	38	17	23	21	1.93
487142--487212	20	3.5	20	74	11	63	36	23	18	21	1.95
487180--487229	20	2.5	20	76	0	64	40	22	16	22	1.91
487439--487505	20	3.3	20	75	8	82	40	22	22	14	1.90

Tables:   1   2   3   4   5   6   7