genome.fa.s9610.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009610.1 Hibiscus syriacus cultivar Beakdansim tig00116996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3811333

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  10  of  18  ( 2160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931053--1931117	33	1.9	34	87	3	96	30	6	21	41	1.77
1932884--1933100	64	3.4	64	83	2	249	34	20	17	27	1.95
1933412--1933447	12	3.0	12	91	0	63	33	5	25	36	1.79
1933428--1933480	23	2.2	24	86	10	72	39	7	24	28	1.82
1939775--1939995	64	3.5	64	84	1	246	33	19	18	27	1.96
1940303--1940338	12	3.0	12	91	0	63	33	5	25	36	1.79
1940303--1940371	24	2.8	26	83	12	85	37	5	24	31	1.79
1943834--1943865	16	2.0	16	93	0	55	28	0	18	53	1.45
1944474--1944519	14	3.3	14	93	0	74	19	2	28	50	1.60
1944641--1944703	11	5.9	11	69	14	51	38	1	3	57	1.24
1945919--1945952	17	1.9	18	88	5	52	64	0	0	35	0.94
1946917--1946959	18	2.2	18	88	12	59	37	0	0	62	0.95
1946917--1946979	21	3.0	21	82	11	67	34	0	0	65	0.93
1951296--1951332	5	7.6	5	93	6	67	0	18	0	81	0.70
1957155--1957197	21	2.0	21	81	0	50	30	30	25	13	1.94
1957292--1957333	23	1.9	22	85	9	59	35	9	9	45	1.69
1957729--1958036	150	2.1	149	94	0	535	27	16	21	34	1.95
1958012--1958056	23	2.0	23	86	0	63	20	26	26	26	1.99
1964683--1964987	150	2.0	150	94	0	531	27	16	20	35	1.94
1964965--1965010	23	2.0	23	82	0	56	19	21	26	32	1.97
1965202--1965246	23	2.0	23	86	0	63	20	26	26	26	1.99
1964910--1965392	236	2.0	236	97	0	905	29	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967250--1967308	21	2.7	23	81	10	77	18	16	18	45	1.85
1971299--1971365	27	2.5	27	90	0	107	35	22	19	22	1.96
1978436--1978508	38	1.9	38	97	0	137	38	16	15	30	1.89
1988237--1988283	20	2.4	19	79	10	58	51	10	19	19	1.75
1988024--1988497	181	2.6	182	90	2	736	42	13	17	26	1.86
1988418--1988464	20	2.4	19	79	10	58	55	10	14	19	1.68
1990601--1990633	15	2.2	15	94	0	57	12	9	69	9	1.36
1990716--1990780	21	3.1	21	90	0	94	43	10	29	16	1.82
1990814--1990879	33	2.0	33	93	0	114	30	0	46	22	1.52
1991066--1991146	18	4.6	18	79	16	98	51	0	44	3	1.19
1991066--1991127	33	1.9	32	93	3	106	53	0	43	3	1.17
1992721--1992769	19	2.6	19	96	0	89	32	2	10	55	1.45
1992999--1993784	200	3.9	200	95	0	1419	36	14	18	31	1.90
1996561--1997666	184	5.9	184	91	4	1791	37	14	15	32	1.88
1997111--1997164	21	2.6	21	100	0	108	37	20	16	25	1.93
1996561--1997666	389	2.9	378	90	5	1678	37	14	15	32	1.88
1996561--1997666	573	1.9	573	95	0	1998	37	14	15	32	1.88
2001097--2001154	23	2.5	23	100	0	116	36	15	10	37	1.82
2004043--2004110	31	2.3	29	80	14	70	36	17	22	23	1.94
2004526--2004555	3	10.0	3	100	0	60	33	0	0	66	0.92
2004755--2004806	20	2.5	20	87	3	77	38	11	23	26	1.89
2007914--2007972	21	2.7	23	81	10	77	16	15	20	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2009075--2009203	64	2.0	64	98	0	249	30	9	26	34	1.88
2012036--2012102	27	2.5	27	95	0	125	35	25	19	19	1.95
2012364--2012562	99	2.0	99	100	0	398	32	6	13	48	1.67
2019228--2019342	38	2.7	46	76	20	165	33	18	16	31	1.93
2028788--2029254	180	2.6	180	88	4	683	42	13	17	26	1.86
2031400--2031432	15	2.2	15	94	0	57	12	9	69	9	1.36
2031513--2031575	20	3.1	20	88	2	81	44	11	30	14	1.79
2031513--2031564	21	2.6	19	90	3	59	46	9	30	13	1.75
2031608--2031671	32	2.0	32	87	6	94	29	0	46	23	1.52
2031882--2031921	15	2.5	17	88	12	66	47	0	52	0	1.00
2031882--2031920	16	2.4	16	91	8	62	46	0	53	0	1.00
2033494--2033542	19	2.6	19	96	0	89	32	2	10	55	1.45
2033772--2034556	200	3.9	200	95	0	1428	36	14	18	31	1.90
2037347--2038431	184	5.9	184	94	0	1893	37	13	15	33	1.87
2041853--2041910	23	2.5	23	100	0	116	36	15	10	37	1.82
2044802--2044869	31	2.3	29	80	14	70	36	17	22	23	1.94
2045292--2045330	3	13.0	3	100	0	78	33	0	0	66	0.92
2046667--2046712	25	1.9	24	86	8	67	34	6	2	56	1.37
2051585--2051618	16	2.1	16	100	0	68	50	11	11	26	1.73
2052406--2052438	16	2.1	16	100	0	66	27	12	12	48	1.76
2052762--2052789	2	14.0	2	100	0	56	50	0	0	50	1.00
2058897--2059185	106	2.7	107	79	6	300	35	10	13	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2059280--2059640	108	3.3	107	71	11	314	33	13	11	40	1.81
2059099--2059746	223	2.9	223	86	3	818	33	12	12	41	1.81
2061949--2062059	20	5.8	20	81	12	135	42	20	18	18	1.90
2062083--2062131	20	2.5	20	80	6	55	20	18	22	38	1.93
2062105--2062198	33	2.8	34	80	3	91	17	19	20	43	1.88
2062172--2062258	20	4.3	20	91	0	129	22	19	20	36	1.95
2064178--2064213	14	2.6	14	90	0	54	30	0	22	47	1.52
2064350--2064417	33	2.1	33	88	0	100	16	25	17	41	1.89
2064400--2064488	20	4.4	20	82	2	108	20	21	22	35	1.96
2066919--2066972	24	2.2	24	90	0	81	40	18	18	22	1.91
2067833--2067919	20	4.3	20	82	2	120	20	20	20	37	1.94
2067916--2067961	21	2.2	21	88	0	65	36	17	28	17	1.92
2069207--2069286	33	2.6	30	84	9	92	45	0	3	51	1.19
2069198--2069297	31	3.4	29	74	18	75	46	0	3	51	1.16
2069328--2069378	23	2.2	23	82	0	57	45	1	1	50	1.24
2069392--2069463	27	2.7	26	77	12	74	51	1	1	45	1.18
2069503--2069552	23	2.2	23	85	7	66	42	2	4	52	1.31
2069543--2069589	22	2.1	23	84	4	60	53	2	2	42	1.25
2069589--2069664	24	3.0	24	76	14	73	47	0	1	51	1.09
2071732--2071778	18	2.7	18	87	6	71	29	23	6	40	1.79
2072215--2072250	9	3.9	10	86	13	51	47	0	0	52	1.00
2072215--2072250	2	19.5	2	83	16	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072329--2072388	11	5.3	11	75	15	59	45	1	5	48	1.34
2072311--2072671	39	9.8	36	78	12	269	44	3	6	46	1.44
2072314--2072671	37	9.7	36	75	14	245	43	3	6	46	1.45
2072339--2072679	150	2.3	150	82	10	389	43	3	5	47	1.45
2072284--2072647	38	9.7	37	75	13	214	44	3	6	45	1.48
2072589--2072614	11	2.4	11	100	0	52	42	7	7	42	1.62
2072712--2072745	16	2.1	17	88	5	52	8	2	2	85	0.80
2074738--2075311	182	3.2	182	89	1	839	29	16	13	41	1.86
2080530--2080580	17	3.0	17	82	5	50	37	3	0	58	1.16
2082345--2082369	2	12.5	2	100	0	50	48	0	0	52	1.00
2097057--2097098	20	2.1	20	86	0	57	35	21	19	23	1.96
2097091--2097136	20	2.3	20	92	0	74	41	23	15	19	1.89
2097287--2097340	22	2.5	22	87	0	81	24	37	14	24	1.93
2097709--2097761	19	2.8	20	88	8	83	13	16	22	47	1.82
2099548--2099599	21	2.5	21	90	0	77	21	17	26	34	1.95
2099879--2099955	21	3.7	21	81	6	84	19	33	22	24	1.97
2099875--2099955	42	1.9	42	87	5	119	18	34	22	24	1.96
2101303--2101335	13	2.4	14	95	5	59	30	0	21	48	1.50
2101467--2101530	20	3.2	20	78	8	85	32	21	23	21	1.98
2103783--2103823	12	3.4	12	86	0	55	19	2	21	56	1.54
2103790--2103824	6	5.8	6	86	0	52	17	2	20	60	1.49
2106029--2106082	24	2.2	24	93	0	90	42	18	16	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2106029--2106098	24	2.9	24	86	0	68	40	18	15	25	1.90
2106997--2107085	20	4.5	19	75	12	65	34	11	22	31	1.89
2107016--2107094	20	3.8	21	77	12	83	31	10	21	36	1.87
2107037--2107149	20	5.6	20	77	8	86	30	13	22	33	1.92
2107156--2107204	20	2.5	20	82	0	71	20	16	24	38	1.92
2118365--2118416	23	2.3	23	83	9	63	48	7	1	42	1.43
2120595--2120646	12	4.0	13	74	16	54	42	1	0	55	1.10
2120688--2120716	15	1.9	15	100	0	58	37	0	6	55	1.27
2120707--2120755	20	2.5	19	83	6	62	32	0	2	65	1.04
2122987--2123040	14	3.8	14	78	4	54	22	14	11	51	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18