genome.fa.s9610.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009610.1 Hibiscus syriacus cultivar Beakdansim tig00116996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3811333

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268320--268361	22	1.9	22	85	0	57	21	28	14	35	1.92
270815--270862	25	1.9	25	91	0	78	47	8	16	27	1.75
284683--284728	20	2.3	21	82	17	62	50	0	4	45	1.21
298007--298033	2	13.5	2	100	0	54	51	48	0	0	1.00
300001--300029	12	2.3	13	94	5	51	68	0	0	31	0.89
301433--301465	2	17.0	2	87	6	50	51	0	0	48	1.00
301451--301498	24	2.0	25	91	4	80	52	6	0	41	1.27
301471--301542	38	1.9	37	88	2	108	44	6	2	45	1.45
301460--301553	38	2.6	36	79	12	102	45	7	2	44	1.43
301962--302173	85	2.5	86	85	3	259	23	19	23	33	1.97
302057--302340	148	1.9	149	86	1	399	21	20	23	33	1.97
302207--303376	84	14.0	84	83	3	1326	23	19	22	33	1.97
302207--303376	250	4.7	252	85	1	1501	23	19	22	33	1.97
302204--303376	334	3.5	334	85	2	1489	23	19	22	33	1.97
304148--304403	95	2.7	93	84	4	287	33	17	15	33	1.92
307014--307046	16	2.0	17	88	5	50	75	0	12	12	1.04
307192--307291	21	4.8	21	88	0	137	20	38	17	25	1.93
308126--308163	16	2.4	16	95	0	67	10	50	13	26	1.73
309784--309822	21	1.9	21	94	5	71	35	7	7	48	1.61
310789--310929	64	2.2	62	80	9	151	32	18	22	26	1.97
310917--310974	20	2.6	22	89	10	84	31	20	22	25	1.98
312223--312300	20	4.0	20	80	6	106	23	23	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312224--312298	38	2.0	38	91	0	123	21	22	32	24	1.98
313134--313212	21	3.7	21	75	9	88	22	32	20	24	1.97
316261--316293	6	5.8	6	92	7	52	84	0	0	15	0.61
316261--316292	17	1.9	17	93	6	57	84	0	0	15	0.63
316257--316306	22	2.3	22	80	10	59	78	0	2	20	0.86
316306--316342	2	19.0	2	94	5	67	48	0	0	51	1.00
316476--316514	2	20.0	2	94	5	71	51	0	0	48	1.00
316389--316588	98	2.1	98	87	2	287	49	6	2	42	1.38
316664--316689	12	2.2	12	100	0	52	46	7	7	38	1.61
316732--316771	2	19.5	2	94	5	71	47	0	2	50	1.14
316496--316749	39	6.5	37	78	15	253	45	4	3	46	1.42
318587--318628	19	2.2	19	100	0	84	40	14	23	21	1.90
319876--319947	21	3.5	21	74	11	85	41	27	13	16	1.87
319857--320085	41	5.6	41	75	15	233	36	24	15	23	1.93
319857--319964	20	5.3	20	69	12	76	37	26	14	21	1.92
320017--320085	20	3.4	20	73	11	77	34	27	15	21	1.94
319897--320116	121	1.8	121	100	0	440	35	23	15	25	1.94
320223--320273	17	2.6	21	73	26	65	27	39	7	25	1.83
320233--320270	17	2.2	17	100	0	76	31	36	5	26	1.79
323214--323249	18	2.0	18	94	0	63	55	25	2	16	1.55
323420--323465	20	2.3	20	96	0	83	32	19	19	28	1.96
323420--323495	20	3.8	20	83	0	71	34	17	15	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323535--323612	20	3.9	20	81	0	84	14	15	24	46	1.83
323663--323832	71	2.5	65	82	14	177	51	15	2	30	1.57
325100--325202	21	4.9	21	71	8	84	25	20	33	20	1.97
325080--325202	42	2.9	42	80	7	151	24	18	35	21	1.95
325342--325372	12	2.6	12	89	0	53	67	3	0	29	1.06
325711--325755	20	2.2	20	84	0	63	37	24	20	17	1.93
325800--325837	20	1.9	20	88	0	58	13	18	18	50	1.78
325871--325939	20	3.5	20	86	7	95	17	21	24	36	1.95
325871--325964	20	4.7	19	82	6	89	17	20	23	39	1.92
327883--327927	20	2.2	20	84	0	63	40	22	20	17	1.92
328529--328594	20	3.3	20	75	8	71	25	19	24	30	1.98
336714--336748	4	8.8	4	93	0	61	22	0	25	51	1.48
344135--344170	6	6.0	6	86	0	54	33	2	13	50	1.57
355334--355415	23	3.6	23	77	11	89	25	23	25	25	2.00
355330--355396	21	3.1	22	79	8	75	23	23	23	28	2.00
361240--361399	65	2.5	65	87	3	225	28	16	23	31	1.96
362949--362998	22	2.3	21	80	13	57	48	8	0	44	1.32
364319--364357	2	19.5	2	100	0	78	51	0	0	48	1.00
365038--365096	26	2.3	26	87	0	100	27	25	35	11	1.91
365927--366064	70	2.0	68	90	2	213	31	23	6	39	1.80
369656--369698	2	21.5	2	100	0	86	51	0	0	48	1.00
371374--371427	10	5.1	10	82	12	72	59	20	11	9	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371387--371435	23	2.1	23	88	7	73	61	24	8	6	1.47
371687--371734	14	3.7	14	78	21	68	60	14	10	14	1.59
371689--371752	24	2.6	24	92	5	101	59	15	9	15	1.60
374554--374613	29	2.0	31	90	6	97	35	6	16	41	1.75
374831--374872	21	2.0	21	95	0	75	23	21	28	26	1.99
375156--375225	34	2.1	32	89	5	104	31	15	28	24	1.96
375899--375946	19	2.5	20	82	3	62	52	6	12	29	1.63
377120--377179	29	2.0	31	90	6	97	35	6	16	41	1.75
377378--377419	21	2.0	21	90	9	68	23	19	28	28	1.98
377448--377487	20	1.9	21	85	10	55	37	37	10	15	1.80
378865--378900	15	2.4	15	90	0	63	22	33	5	38	1.77
390136--390193	26	2.2	26	100	0	116	20	12	36	31	1.89
392290--392552	43	6.1	43	79	6	266	33	22	20	23	1.97
392294--392550	86	3.0	86	84	2	302	34	21	19	24	1.97
392286--392537	129	2.0	128	83	5	321	34	21	19	24	1.97
392752--392801	20	2.5	20	83	0	64	36	32	6	26	1.81
399132--399171	21	2.0	21	85	5	55	62	15	0	22	1.32
400826--405062	4	1076.8	4	86	8	5338	47	24	2	25	1.66
403679--403728	6	8.2	6	77	20	50	50	22	0	28	1.49
405087--405153	2	34.0	2	96	3	127	49	50	0	0	1.00
410371--410648	140	2.0	139	92	0	457	21	12	25	41	1.88
411172--411246	39	1.9	39	83	5	98	21	18	14	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411276--411747	136	3.5	135	84	3	596	27	21	15	34	1.94
411768--411864	42	2.3	41	79	8	106	30	21	20	26	1.98
411782--411864	42	2.0	42	87	0	121	32	20	20	26	1.97
411976--412096	55	2.3	52	84	10	172	40	16	10	32	1.83
417852--417895	6	7.3	6	94	0	79	50	18	15	15	1.79
418509--418578	33	2.1	33	100	0	140	40	14	8	37	1.76
418926--422419	4	898.2	4	93	5	6166	49	25	0	24	1.52
427525--427551	2	13.5	2	100	0	54	51	0	0	48	1.00
427898--428098	43	4.7	44	85	3	239	32	20	22	24	1.98
431781--432668	443	2.0	444	95	1	1611	41	13	14	31	1.84
433024--433083	29	2.1	29	100	0	120	40	10	20	30	1.85
433386--433440	20	2.8	20	91	0	92	21	25	30	21	1.98
434198--434245	17	3.0	15	77	14	51	56	27	2	14	1.50
436207--436267	20	2.9	21	85	7	70	16	26	32	24	1.96
440076--440118	20	2.2	20	83	8	52	37	4	2	55	1.33
445952--445982	16	1.9	16	100	0	62	25	0	0	74	0.82
449054--449084	14	2.1	15	94	5	55	58	16	19	6	1.59
454813--454876	32	2.0	32	96	0	119	45	9	23	21	1.81
461904--461928	2	12.5	2	100	0	50	0	0	48	52	1.00
465368--465433	33	2.0	33	100	0	132	45	9	12	33	1.73
465949--465992	22	1.9	23	81	9	54	38	6	0	54	1.27
473297--473607	31	10.0	31	92	0	498	22	18	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476398--476440	17	2.6	16	78	7	50	34	0	25	39	1.56
477530--477716	31	6.0	31	93	1	313	20	18	21	38	1.93
482296--482680	182	2.1	182	92	1	639	46	8	2	42	1.48
485836--486053	43	5.0	44	79	4	194	35	20	18	25	1.95
486313--486345	2	16.5	2	100	0	66	48	0	0	51	1.00
496278--496329	21	2.5	21	87	3	70	38	17	23	21	1.93
496349--496411	20	3.0	21	69	4	56	23	19	15	41	1.90
496401--496474	20	3.7	20	80	3	85	40	18	20	20	1.92
501081--501120	19	2.1	19	95	0	71	70	0	17	12	1.18
501132--501171	15	2.7	15	96	3	73	57	0	10	32	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18