genome.fa.s9633.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009633.1 Hibiscus syriacus cultivar Beakdansim tig00117032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2608659

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192636--195217	877	2.9	878	93	1	4400	39	16	18	25	1.91
202321--202370	20	2.5	20	96	0	91	30	12	28	30	1.92
202851--202921	15	4.7	15	82	0	79	38	5	18	38	1.74
203051--203102	25	2.1	25	85	7	70	21	23	21	34	1.97
204450--204476	4	6.8	4	100	0	54	77	0	0	22	0.76
204710--204735	12	2.2	12	100	0	52	46	7	15	30	1.74
213329--213422	49	1.9	49	84	4	127	50	3	9	37	1.51
214921--214970	19	2.5	19	87	6	73	24	16	2	58	1.49
215755--215783	15	1.9	15	100	0	58	20	3	62	13	1.46
215764--215798	18	1.9	18	88	0	52	14	8	62	14	1.53
220036--220065	15	2.0	15	100	0	60	33	13	13	40	1.83
224870--224930	2	30.5	2	96	0	113	50	1	0	47	1.10
226922--226955	18	1.9	17	88	5	50	64	5	0	29	1.17
234796--234829	18	1.9	17	88	5	50	64	5	0	29	1.17
241169--241227	25	2.4	25	97	0	109	18	22	15	44	1.87
247940--247969	14	2.1	15	93	6	53	16	26	23	33	1.96
249592--249675	37	2.2	37	91	4	132	51	1	0	47	1.08
253121--253155	9	3.9	9	100	0	70	68	0	0	31	0.90
253265--253366	34	2.9	35	84	8	127	44	1	4	49	1.35
253393--253489	49	2.1	48	81	12	116	44	2	5	48	1.36
253546--253583	7	5.6	7	81	6	51	50	34	0	15	1.45
253546--253583	20	1.9	20	94	0	67	50	34	0	15	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253695--253755	16	3.5	16	71	26	52	39	6	11	42	1.67
253747--253800	20	2.6	21	82	5	65	46	5	9	38	1.59
253785--253839	2	28.0	2	96	3	103	49	0	0	50	1.00
253962--254022	2	31.0	2	90	9	99	49	1	0	49	1.10
253964--254044	16	5.4	15	85	8	69	48	6	1	44	1.35
253785--254209	193	2.2	184	91	6	676	45	8	5	39	1.58
254088--254162	37	2.1	36	85	5	98	40	9	10	40	1.72
254149--254207	18	3.2	18	88	9	84	49	6	1	42	1.39
254697--254767	31	2.4	30	80	13	92	45	2	2	49	1.31
254780--254853	13	5.5	13	70	16	53	47	1	1	50	1.18
254780--254853	27	2.7	28	82	14	75	47	1	1	50	1.18
254780--254838	28	2.1	28	84	12	77	47	0	1	50	1.11
258644--258692	23	2.2	22	92	3	80	22	22	32	22	1.98
262168--262207	21	1.9	21	89	0	62	30	7	7	55	1.56
266862--266899	13	2.8	13	82	17	51	60	0	2	36	1.11
266878--266969	18	5.0	17	74	16	76	60	2	3	33	1.25
266867--266972	18	5.6	19	70	19	71	59	1	2	35	1.23
266896--266972	38	2.0	39	87	7	113	58	2	2	36	1.26
269871--269937	29	2.3	28	75	14	66	49	2	2	44	1.32
272682--272761	30	2.7	30	82	5	101	21	28	37	12	1.90
278155--278312	82	1.9	83	88	3	239	32	5	12	50	1.62
279575--279669	41	2.3	41	89	5	138	37	22	18	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279658--279721	21	3.1	21	71	8	60	40	25	15	18	1.90
284029--284145	29	4.0	29	97	0	216	36	23	17	22	1.95
286966--286998	2	16.5	2	100	0	66	0	48	0	51	1.00
300311--300348	19	2.0	20	94	5	69	44	0	0	55	0.99
300296--300350	27	2.0	28	89	3	85	45	0	0	54	0.99
302284--302368	18	4.6	18	70	14	57	16	7	2	74	1.15
302284--302454	19	9.4	18	67	19	72	19	5	2	71	1.19
302317--302368	16	3.1	16	71	10	50	13	9	3	73	1.23
302295--302481	34	5.4	34	73	19	131	18	6	3	71	1.23
302407--302456	11	4.6	11	73	14	50	16	4	2	78	1.00
306557--306809	95	2.6	95	86	5	330	33	17	17	32	1.93
308422--308502	36	2.2	36	93	4	135	30	20	12	35	1.90
308590--308654	21	3.4	21	68	24	70	24	21	12	41	1.87
308521--308844	72	4.6	72	78	10	238	26	19	13	40	1.88
308422--308906	173	2.8	174	91	2	749	27	19	12	39	1.89
308593--308777	101	1.8	102	89	1	291	28	19	12	39	1.88
308690--308846	37	4.3	36	86	3	217	24	19	14	42	1.88
308517--308675	36	4.4	36	85	3	214	27	20	13	38	1.89
308690--308846	73	2.2	73	88	1	226	24	19	14	42	1.88
308901--309074	35	5.4	35	77	16	198	40	17	9	32	1.83
308901--309074	64	2.7	65	82	14	213	40	17	9	32	1.83
309077--309280	84	2.5	83	79	7	193	29	25	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310731--310917	13	14.3	12	68	23	53	18	5	2	73	1.12
310732--310917	19	9.6	19	68	19	75	18	5	2	74	1.11
310739--310918	5	36.6	5	66	21	62	17	5	2	74	1.11
310738--310876	35	3.8	34	75	14	93	19	5	2	72	1.15
310820--310880	24	2.5	24	76	7	61	22	3	1	72	1.09
310833--310917	34	2.5	33	78	12	91	20	3	2	74	1.08
310858--310919	11	5.6	11	76	14	65	16	3	1	79	0.95
310731--310942	114	1.8	111	82	12	268	18	6	2	73	1.15
311552--311609	29	2.0	29	96	0	107	13	22	37	25	1.91
312211--312261	7	7.3	7	86	0	66	45	33	0	21	1.52
312366--312892	295	1.9	283	84	8	721	37	22	8	31	1.84
312947--312976	7	4.3	7	91	0	51	16	0	36	46	1.47
314804--314847	20	2.1	22	91	8	74	38	13	0	47	1.43
314948--314987	21	1.9	21	84	0	53	45	7	10	37	1.66
321335--321372	2	19.0	2	100	0	76	50	0	0	50	1.00
322506--322640	50	2.6	52	90	3	220	48	12	7	31	1.68
322652--322723	2	36.0	2	100	0	144	50	0	0	50	1.00
322905--323075	6	28.5	6	99	0	306	16	18	30	33	1.94
322909--323185	6	46.2	6	97	0	284	17	26	23	32	1.96
331221--331266	17	2.7	18	83	12	53	50	0	0	50	1.00
335433--335738	30	10.2	29	73	12	163	36	7	1	53	1.40
335460--335738	117	2.3	121	76	9	277	36	7	1	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335643--335759	33	3.7	31	76	10	103	35	2	1	59	1.21
336128--336157	11	2.8	11	95	5	53	70	0	0	30	0.88
336738--336790	21	2.5	21	78	6	63	20	24	18	35	1.95
336819--336855	19	1.9	19	100	0	74	43	10	21	24	1.84
336850--336942	20	4.7	20	84	0	114	29	27	17	25	1.97
337129--337172	22	2.0	22	86	0	61	22	43	13	20	1.87
337395--337421	14	1.9	14	100	0	54	51	25	14	7	1.68
337435--337484	20	2.5	20	86	0	64	16	18	26	40	1.90
338813--338860	18	2.7	18	90	0	78	27	43	12	16	1.84
339406--339461	20	2.9	19	75	2	58	39	21	25	14	1.91
339436--339497	19	3.5	19	72	20	71	45	22	20	11	1.83
339523--339609	20	4.4	20	84	4	106	14	22	24	37	1.92
339536--339635	20	5.1	19	83	8	83	21	19	25	35	1.96
339536--339629	40	2.4	40	82	8	104	18	20	25	36	1.95
339972--340036	21	3.1	21	76	8	78	23	40	12	24	1.89
339973--340063	41	2.2	42	86	2	121	23	39	14	23	1.91
341620--341687	34	2.0	35	88	2	102	48	26	14	10	1.76
341704--341747	20	2.2	20	87	0	61	20	22	18	38	1.93
341711--341757	20	2.3	20	100	0	94	14	23	25	36	1.93
341976--342024	20	2.4	21	86	3	64	20	22	16	40	1.91
342204--342237	12	2.9	12	86	4	52	17	41	5	35	1.74
343009--343033	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345295--345392	19	5.7	19	68	22	90	42	18	22	16	1.88
345296--345395	33	3.0	33	89	2	148	41	18	22	19	1.91
345419--345510	19	5.4	19	69	24	87	10	22	20	45	1.82
345436--345492	14	3.7	14	75	20	60	8	24	22	43	1.81
345419--345510	33	2.8	33	98	0	175	10	22	20	45	1.82
345617--345653	14	2.6	14	91	0	65	45	24	0	29	1.53
347303--347486	90	2.0	90	89	7	282	47	18	11	21	1.80
348132--348478	174	2.0	173	97	2	660	35	17	13	33	1.89
349193--349253	20	3.1	19	79	9	68	45	16	22	14	1.84
349218--349314	33	2.9	33	87	7	135	41	20	22	15	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13