genome.fa.s9633.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009633.1 Hibiscus syriacus cultivar Beakdansim tig00117032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2608659

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1552 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545608--545884	139	2.0	139	89	1	430	32	14	18	33	1.91
545851--545905	20	2.8	20	74	0	65	34	20	16	29	1.94
545732--546627	119	7.5	119	94	0	1515	33	16	18	32	1.93
545970--546018	20	2.5	20	86	0	62	26	24	16	32	1.96
546089--546143	20	2.8	20	80	0	74	30	21	20	27	1.98
546208--546262	20	2.8	20	80	0	74	30	21	20	27	1.98
546327--546380	19	2.8	20	80	2	74	31	22	20	25	1.98
546445--546499	20	2.8	20	80	0	74	30	20	20	29	1.97
545732--546627	356	2.5	357	94	0	1542	33	16	18	32	1.93
546564--546618	20	2.8	20	82	0	74	29	23	20	27	1.99
546761--546818	3	19.7	3	82	10	66	36	5	0	58	1.20
548264--548417	60	2.6	60	87	8	224	49	9	9	31	1.67
548566--548599	17	1.9	18	94	5	61	47	0	0	52	1.00
549959--550016	29	2.0	29	86	6	82	31	0	12	56	1.35
550875--550907	16	2.0	17	94	5	59	39	0	0	60	0.97
560522--560590	23	3.0	23	82	0	75	30	21	26	21	1.99
573420--573469	15	3.3	15	94	5	84	46	6	40	8	1.58
575267--575308	19	2.2	20	91	4	68	52	0	0	47	1.00
575277--575328	22	2.4	22	83	0	59	53	1	0	44	1.11
576226--576298	34	2.1	34	87	0	101	38	5	6	49	1.53
576810--576883	21	3.5	21	70	14	62	22	16	33	27	1.95
578415--578481	28	2.3	30	77	15	77	56	2	1	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578638--578685	17	2.8	18	75	12	55	52	0	0	47	1.00
582463--582593	39	3.4	39	92	0	208	23	25	21	29	1.99
584138--584185	25	2.0	25	84	8	64	45	0	0	54	0.99
600545--600661	47	2.5	48	77	4	121	29	14	17	38	1.90
604934--605000	22	3.1	21	77	12	66	50	23	0	25	1.49
604934--604992	21	2.8	20	84	10	64	49	23	0	27	1.51
607618--607676	29	2.0	29	90	0	91	30	23	20	25	1.98
614930--615018	37	2.4	39	85	11	132	12	8	37	41	1.74
620022--620060	20	2.0	20	85	10	53	38	17	2	41	1.64
623377--623403	2	13.5	2	100	0	54	51	0	48	0	1.00
626266--626375	32	3.5	32	84	1	123	17	27	26	29	1.97
627659--627693	17	2.1	17	88	0	52	25	31	14	28	1.95
628434--628485	19	2.7	19	90	0	86	23	32	15	28	1.95
634597--634623	2	13.5	2	100	0	54	48	0	0	51	1.00
635405--635455	16	3.2	16	75	5	50	54	3	13	27	1.56
637394--637489	3	32.3	3	82	2	113	61	2	0	36	1.08
637619--637949	124	2.7	124	87	0	491	27	19	15	38	1.91
638392--638442	26	2.0	26	81	14	61	45	13	13	27	1.82
640960--640993	16	2.2	16	94	5	61	8	26	35	29	1.87
640964--641002	15	2.5	16	83	8	53	15	25	28	30	1.96
642129--642169	21	2.0	20	85	4	55	34	7	0	58	1.26
642517--642574	30	2.0	30	86	3	82	34	25	3	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643011--643209	21	9.8	20	72	6	114	38	24	17	20	1.93
643011--643228	20	10.8	20	69	10	113	38	25	16	19	1.92
643092--643203	41	2.7	41	91	6	174	38	21	16	23	1.93
643176--643369	20	9.6	20	81	5	221	35	25	19	19	1.95
643176--643369	60	3.2	60	83	0	253	35	25	19	19	1.95
643750--643820	33	2.2	33	89	0	106	11	23	16	47	1.79
643900--644005	21	5.6	20	70	16	91	45	18	25	10	1.81
643898--643976	21	3.8	21	79	12	92	45	16	26	11	1.81
643893--644009	41	3.1	38	79	14	136	46	17	26	10	1.80
643963--644016	14	3.5	14	73	22	54	42	24	25	7	1.80
643952--644021	33	2.1	33	97	0	131	47	20	25	7	1.75
643958--644032	33	2.3	33	92	0	123	46	24	22	6	1.75
644028--644130	19	5.9	19	74	19	100	10	24	21	43	1.84
644028--644133	52	2.0	52	94	0	185	10	24	20	44	1.83
645830--646208	93	4.1	93	97	1	726	22	12	18	45	1.83
645830--646210	184	2.1	185	97	1	728	22	12	18	45	1.83
646252--646366	19	6.3	19	81	10	141	46	28	16	8	1.77
646362--646495	19	7.6	19	74	18	119	11	18	23	46	1.81
646384--646440	14	3.7	14	77	20	60	10	21	22	45	1.82
646367--646458	33	2.8	33	93	1	159	10	19	21	47	1.80
648411--648446	14	2.6	14	90	0	54	33	2	19	44	1.65
648553--648652	19	5.5	19	84	12	147	45	17	23	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648553--648669	53	2.2	53	95	1	209	43	17	24	14	1.86
648659--648826	19	9.6	19	76	18	177	14	23	17	44	1.86
648665--648826	33	4.7	33	74	16	159	14	22	17	45	1.85
648659--648826	52	3.2	52	97	0	309	14	23	17	44	1.86
648884--648981	19	5.4	19	84	13	143	45	17	22	14	1.84
648884--649000	53	2.2	53	98	1	227	44	17	23	13	1.85
651517--651563	24	2.0	24	87	8	69	38	21	14	25	1.92
652246--652495	20	12.5	20	86	1	268	20	17	24	37	1.93
652482--652564	21	4.0	21	73	6	78	25	16	24	33	1.96
652462--652560	42	2.4	43	77	11	100	21	18	23	37	1.94
652717--652763	21	2.3	20	89	7	76	34	2	0	63	1.06
677290--677315	2	13.0	2	100	0	52	50	0	0	50	1.00
681733--682283	213	2.5	215	90	5	858	21	12	29	37	1.90
682239--682327	38	2.4	38	88	7	146	11	10	40	38	1.75
682705--682737	17	1.9	17	88	11	50	30	0	0	69	0.88
687090--687227	36	3.9	35	87	2	195	18	26	21	34	1.96
687090--687232	72	2.0	71	93	1	241	17	25	20	36	1.94
689836--689918	41	2.0	41	92	2	139	30	24	14	31	1.94
691125--691184	14	4.3	14	95	0	102	8	13	26	51	1.69
691974--692030	16	3.7	16	83	4	73	12	10	19	57	1.63
692090--692122	16	2.1	16	94	0	57	9	12	21	57	1.62
695500--695538	3	12.7	3	83	5	51	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696473--696514	21	1.9	23	85	9	61	45	7	23	23	1.78
696615--696675	22	2.8	22	87	0	77	29	19	24	26	1.99
697213--697265	22	2.4	23	84	9	74	26	22	28	22	1.99
698861--698902	19	2.2	19	87	8	59	54	0	2	42	1.13
699535--699898	176	2.1	175	92	2	595	42	4	7	45	1.53
708175--708207	16	2.0	17	88	5	50	33	0	6	60	1.21
713183--713208	4	6.5	4	100	0	52	23	0	0	76	0.78
718806--718830	13	1.9	13	100	0	50	32	8	0	60	1.26
723300--723354	27	1.9	30	82	10	71	45	1	5	47	1.36
724236--724328	21	4.5	21	78	4	100	39	18	24	17	1.91
724236--724328	41	2.3	41	100	0	186	39	18	24	17	1.91
724255--724389	41	3.3	41	83	4	139	38	20	20	20	1.94
724317--724410	20	4.7	20	77	2	80	34	23	17	25	1.96
724929--724975	19	2.5	19	89	0	67	48	25	17	8	1.74
724971--725103	20	7.1	19	78	13	141	12	21	20	45	1.83
725014--725078	34	1.9	34	90	3	105	10	23	23	43	1.85
724978--725064	39	2.2	39	82	8	97	11	20	21	45	1.82
727105--727227	42	2.9	42	80	2	122	23	36	17	22	1.94
727161--727227	21	3.2	21	68	4	55	25	35	19	19	1.95
728587--728622	14	2.6	14	95	0	63	30	0	25	44	1.54
728906--728964	19	3.4	19	68	22	65	13	20	18	47	1.82
728804--728964	33	4.9	32	87	3	187	18	21	18	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730384--730430	23	2.0	23	100	0	94	25	21	17	36	1.94
731276--731300	12	2.1	12	100	0	50	0	28	0	72	0.86
732508--732565	20	2.9	20	89	0	89	37	22	20	18	1.94
734583--734646	19	3.4	19	86	2	94	37	25	21	15	1.93
734698--734781	29	2.7	30	81	10	98	11	19	21	47	1.81
734766--734809	20	2.2	20	88	4	63	18	25	20	36	1.95
735290--735334	18	2.5	18	88	0	72	13	15	44	26	1.83
736636--736673	20	1.9	20	88	0	58	50	21	15	13	1.78
737164--737257	20	4.7	20	80	2	89	24	17	24	34	1.96
737144--737258	20	5.7	20	78	5	88	24	16	23	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13