genome.fa.s15381.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015381.1 Kokia drynarioides strain JFW-HI SEQ_130428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2291099

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 908 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374831--375062	126	1.9	126	87	2	281	37	20	4	37	1.72
376885--377011	62	2.0	62	92	0	209	29	12	7	49	1.69
380260--380476	47	4.6	47	78	5	224	21	23	22	32	1.98
380260--380512	94	2.7	92	76	3	245	22	22	22	32	1.98
381459--381527	34	2.0	34	97	0	129	28	23	23	24	1.99
388944--388991	23	2.1	23	100	0	96	39	4	16	39	1.68
390134--390641	258	2.0	257	89	2	775	39	10	7	42	1.66
394137--394168	17	1.9	17	93	6	57	0	15	0	84	0.63
394735--394773	17	2.3	17	86	0	51	51	15	12	20	1.76
400960--401032	36	2.0	36	91	0	119	39	21	10	27	1.87
407686--407750	30	2.2	30	97	0	121	35	23	12	29	1.91
407781--407890	39	2.8	39	88	0	166	27	20	19	32	1.97
413662--413701	20	2.0	21	85	5	55	7	7	15	70	1.33
419560--419617	25	2.4	23	80	11	64	44	22	24	8	1.80
424364--424410	3	15.7	3	100	0	94	68	0	31	0	0.90
426544--426574	2	15.5	2	93	0	53	54	45	0	0	0.99
427325--427367	16	2.5	18	85	14	56	2	30	2	65	1.18
429493--429541	21	2.3	21	92	0	89	36	22	14	26	1.92
430200--430249	18	2.8	17	78	3	55	46	0	4	50	1.20
431181--431342	59	2.7	59	88	1	245	29	18	21	30	1.97
432169--432199	16	1.9	16	93	0	53	29	0	0	70	0.87
449828--449876	24	2.1	24	88	3	73	26	16	8	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459164--459212	24	2.1	24	88	3	73	26	16	8	48	1.73
460758--460801	22	2.0	22	82	8	54	34	22	2	40	1.67
465223--465272	18	2.8	17	78	3	55	48	2	2	48	1.24
469248--469294	4	11.8	4	95	0	58	42	0	8	48	1.33
470234--470403	81	2.1	83	86	3	236	26	17	26	29	1.98
470234--470403	42	4.1	42	85	4	229	26	17	26	29	1.98
470708--470931	49	4.5	49	76	6	200	17	32	15	34	1.91
470707--471073	99	3.7	99	82	2	443	17	31	16	34	1.93
470568--470882	149	2.1	150	78	4	350	17	30	15	36	1.91
470654--471067	50	8.4	50	73	6	261	17	31	16	34	1.93
471925--471966	6	7.2	6	79	15	52	0	21	0	78	0.75
471925--471974	17	2.9	17	80	13	57	0	22	0	78	0.76
471925--471983	23	2.6	23	81	8	66	0	23	0	76	0.79
472843--472875	7	4.9	7	92	7	59	0	12	0	87	0.53
476805--476849	21	2.1	21	84	8	56	62	4	0	33	1.15
477059--477114	29	2.0	28	83	13	71	57	5	19	17	1.59
478011--478050	21	2.0	20	85	9	55	10	10	0	80	0.92
481551--481705	38	4.1	38	86	6	208	32	16	2	49	1.59
481900--481943	22	2.1	22	83	8	56	29	2	6	61	1.34
484750--484789	11	3.8	11	78	21	50	70	0	0	30	0.88
484751--484791	21	2.0	20	85	9	55	68	0	0	31	0.90
486658--486691	18	1.9	17	94	5	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491713--491752	20	1.9	21	85	10	55	47	27	7	17	1.74
500931--500977	20	2.3	22	89	10	73	44	10	8	36	1.70
500945--500989	20	2.2	20	88	0	63	35	15	8	40	1.79
504750--504809	26	2.3	26	85	5	86	38	8	21	31	1.83
505638--505712	35	2.1	35	100	0	150	38	20	2	38	1.66
513062--513422	59	6.1	58	76	11	192	34	3	28	33	1.75
513184--513423	59	4.1	59	82	1	275	35	2	28	34	1.71
513156--513423	29	9.1	29	78	6	245	34	2	28	33	1.73
514558--514642	3	28.3	3	100	0	170	32	0	0	67	0.91
515307--515371	17	3.9	16	80	9	67	49	4	3	43	1.39
515302--515356	23	2.4	22	79	11	58	49	5	1	43	1.36
516726--516827	18	5.7	18	85	0	123	22	22	21	32	1.97
516726--516845	36	3.3	36	82	1	132	22	21	24	30	1.98
519055--519117	26	2.4	26	81	0	81	20	34	26	17	1.95
523017--523059	22	2.0	22	86	8	63	58	4	0	37	1.19
524644--524791	73	2.0	75	90	2	237	50	8	15	25	1.73
529608--529650	20	2.2	20	87	8	61	55	4	11	27	1.55
531371--531527	78	2.0	78	100	0	314	28	7	24	40	1.82
535015--535064	21	2.4	21	75	0	55	30	16	22	32	1.95
537583--537736	41	3.7	41	92	0	227	37	9	27	24	1.87
537513--537744	82	2.8	82	81	6	247	38	11	25	24	1.88
541426--541486	24	2.5	24	84	5	70	50	6	0	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543403--543446	23	1.9	23	85	0	61	43	2	9	45	1.48
545058--545120	31	2.0	31	84	0	81	41	3	4	50	1.39
567108--567158	27	1.9	27	84	11	70	49	0	13	37	1.43
571591--571708	40	3.0	40	88	0	164	27	18	25	27	1.98
575302--575376	24	3.1	24	94	0	123	57	9	9	24	1.59
577219--577308	27	3.3	27	84	0	117	33	14	26	25	1.94
579024--579053	12	2.5	12	94	0	51	50	0	0	50	1.00
581521--581556	2	18.0	2	100	0	72	50	0	50	0	1.00
582249--582287	20	2.0	20	89	0	60	69	2	2	25	1.14
584416--584476	27	2.3	27	83	8	72	39	14	24	21	1.91
590020--590077	20	2.9	21	79	10	66	55	6	8	29	1.56
590009--590110	21	5.1	20	72	13	66	51	10	6	30	1.62
598394--598454	20	3.0	20	80	9	61	50	9	8	31	1.65
609712--609995	52	5.6	52	83	5	312	33	22	15	28	1.95
616851--617142	52	5.7	52	82	8	258	34	22	15	27	1.94
616894--617123	52	4.4	52	87	1	293	35	21	15	27	1.94
616894--617142	104	2.4	104	87	3	351	34	21	15	28	1.94
629786--629829	20	2.2	20	100	0	88	27	13	9	50	1.72
642408--642437	14	2.2	14	94	5	53	36	10	23	30	1.87
645053--645101	21	2.3	21	89	6	73	2	40	0	57	1.10
646030--646099	35	2.0	35	100	0	140	25	20	22	31	1.98
646969--647007	21	1.9	21	89	5	62	66	7	12	12	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652819--652848	14	2.2	14	94	5	53	36	10	20	33	1.86
656223--656256	17	2.1	16	88	5	50	52	5	2	38	1.41
658009--658039	4	7.8	4	100	0	62	51	22	0	25	1.48
668897--669259	30	12.3	30	71	14	220	32	25	4	37	1.76
668895--669259	59	6.2	60	74	10	254	32	25	4	36	1.77
668913--669259	118	2.9	118	79	5	326	32	25	4	37	1.76
669150--669287	30	4.6	29	69	17	88	31	28	3	35	1.75
677232--677269	19	2.0	19	94	0	67	34	21	7	36	1.82
677719--677773	30	1.9	28	85	10	76	49	0	27	23	1.51
677943--677979	19	1.9	20	88	5	58	35	0	37	27	1.57
679300--679351	17	3.1	17	83	10	54	50	7	15	26	1.71
679313--679353	17	2.4	17	88	8	57	56	4	12	26	1.56
680671--680699	13	2.3	13	94	5	51	79	6	13	0	0.93
688839--688894	29	2.0	29	85	3	78	46	10	0	42	1.38
689331--689366	2	18.0	2	100	0	72	50	0	0	50	1.00
689893--689947	21	2.6	21	94	0	101	36	25	14	23	1.93
690481--690693	52	4.1	51	83	7	268	30	22	17	28	1.97
690489--690691	104	2.0	103	90	4	320	31	22	17	28	1.97
692382--692599	78	2.8	78	81	2	276	24	16	20	38	1.93
692376--692593	39	5.6	39	75	2	168	25	16	19	38	1.93
695372--695404	11	2.8	12	86	9	50	39	24	6	30	1.79
695556--695586	13	2.4	13	100	0	62	35	25	16	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700108--700136	2	14.5	2	100	0	58	48	0	0	51	1.00
704462--704702	52	4.6	52	81	5	267	32	14	23	29	1.94
705421--705480	21	2.8	22	75	7	61	40	8	18	33	1.80
711671--711865	52	3.8	50	85	6	241	34	12	25	27	1.92
711679--711911	104	2.2	103	78	10	235	33	14	23	28	1.94
716976--717023	6	7.7	6	81	9	60	79	2	18	0	0.84
716975--717023	19	2.6	19	90	0	71	79	2	18	0	0.83
717970--718293	49	6.6	49	78	4	303	37	16	24	20	1.93
718019--718293	98	2.8	98	88	1	399	38	16	24	20	1.93
718322--718436	42	2.7	42	85	5	135	39	15	26	19	1.91

Tables:   1   2   3   4   5   6   7   8