genome.fa.s15381.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015381.1 Kokia drynarioides strain JFW-HI SEQ_130428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2291099

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 908 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113851--1113900	23	2.2	23	85	0	64	44	16	6	34	1.72
1117236--1117286	23	2.2	23	86	6	68	45	17	3	33	1.67
1117680--1117766	36	2.4	36	80	3	104	37	21	6	33	1.80
1131780--1131835	21	2.7	21	77	0	67	28	17	23	30	1.97
1135400--1135485	26	3.5	26	68	23	78	47	0	1	51	1.08
1135391--1135482	46	2.0	46	91	6	152	45	0	1	53	1.07
1135506--1135539	6	5.5	6	96	3	59	0	61	0	38	0.96
1140451--1140501	21	2.5	20	81	12	59	29	11	27	31	1.92
1141236--1141269	16	2.1	17	88	5	52	38	20	14	26	1.91
1141671--1141711	2	20.5	2	100	0	82	51	0	0	48	1.00
1141766--1141832	17	3.9	17	73	7	64	41	19	8	29	1.82
1142899--1142964	24	2.6	26	77	18	77	45	18	1	34	1.59
1143979--1144021	21	2.0	21	95	0	77	37	13	16	32	1.88
1143982--1144027	21	2.2	21	88	0	65	41	13	19	26	1.88
1144825--1144857	14	2.3	15	89	5	50	54	0	0	45	0.99
1160982--1161024	18	2.4	17	82	17	52	13	11	34	39	1.82
1164192--1164240	17	2.7	18	78	12	55	53	18	2	26	1.56
1164866--1164917	18	2.9	18	77	11	61	48	21	1	28	1.61
1166993--1167067	28	2.6	28	87	2	96	32	30	28	9	1.88
1180590--1180627	15	2.5	15	86	0	58	50	0	47	2	1.15
1181013--1181055	17	2.5	17	84	0	50	16	9	16	58	1.63
1181024--1181056	17	1.9	17	93	0	57	12	9	18	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181127--1181251	61	2.0	61	100	0	250	35	11	23	30	1.90
1181692--1181724	15	2.2	15	89	10	50	81	3	15	0	0.80
1185813--1185920	55	2.0	55	83	7	139	27	18	27	25	1.98
1199937--1200019	42	2.0	42	95	0	148	21	22	13	42	1.88
1200227--1200261	3	11.7	3	100	0	70	0	34	0	65	0.93
1202102--1202134	17	1.9	17	93	0	57	24	6	15	54	1.63
1212089--1212504	122	3.4	122	84	1	503	24	22	15	37	1.93
1212831--1213048	99	2.2	98	81	4	242	20	33	13	32	1.92
1212830--1213296	148	3.2	148	81	3	462	19	29	14	35	1.92
1213037--1213610	99	5.8	100	74	8	406	19	27	15	37	1.92
1213038--1213610	196	2.9	198	81	5	574	19	27	15	37	1.92
1213281--1213664	99	3.9	96	75	8	294	19	27	15	36	1.93
1212832--1213603	49	15.7	49	70	7	291	19	29	14	36	1.92
1225661--1225793	56	2.4	56	96	0	239	36	12	16	35	1.86
1228848--1228880	17	1.9	17	93	0	57	33	6	21	39	1.78
1228858--1228907	23	2.2	22	80	13	57	34	4	16	46	1.65
1233122--1233372	83	3.0	82	81	7	263	39	20	16	23	1.92
1233116--1233361	42	5.9	41	74	7	172	39	20	16	23	1.92
1238470--1238549	37	2.1	37	95	2	142	51	15	15	18	1.77
1246081--1246114	17	2.0	17	88	11	52	52	0	0	47	1.00
1249172--1249206	18	1.9	18	94	0	61	57	0	0	42	0.99
1250244--1250281	18	2.1	18	85	9	51	55	0	23	21	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256362--1256396	18	1.9	18	88	0	52	54	0	0	45	0.99
1256714--1256765	22	2.4	22	100	0	104	38	7	19	34	1.80
1257443--1257480	18	2.1	18	85	9	51	55	0	23	21	1.44
1259594--1259631	20	1.9	20	84	10	51	57	2	13	26	1.49
1264585--1264703	41	2.9	41	82	6	134	21	26	13	38	1.90
1265528--1265601	12	6.3	12	76	4	80	68	22	2	5	1.23
1265528--1265619	23	4.0	23	84	4	105	69	19	5	5	1.28
1265514--1265579	20	3.1	20	74	19	62	66	24	3	6	1.28
1265559--1265607	11	4.4	11	82	5	53	71	16	6	6	1.27
1265651--1265744	18	5.1	18	78	14	102	72	15	4	7	1.23
1265664--1265722	16	3.4	16	77	11	64	72	15	5	6	1.23
1265651--1265744	19	5.1	19	78	11	97	72	15	4	7	1.23
1265655--1265721	35	1.9	34	90	3	107	71	13	5	8	1.29
1265681--1265744	21	3.2	20	86	4	85	75	14	3	7	1.15
1265697--1265761	21	3.0	23	81	6	64	72	15	4	7	1.24
1266481--1266520	20	2.0	20	85	0	53	22	12	30	35	1.91
1266505--1266585	41	2.0	41	83	9	103	35	11	25	27	1.90
1267259--1267305	22	2.1	22	96	0	85	46	8	6	38	1.60
1267653--1267752	48	2.1	48	87	5	141	30	29	3	38	1.72
1268000--1268027	14	2.0	14	100	0	56	14	7	35	42	1.73
1271495--1271549	28	2.0	28	100	0	110	54	1	0	43	1.10
1273284--1273432	43	3.5	43	88	0	208	26	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1273257--1273431	86	2.0	86	82	2	208	26	16	26	31	1.96
1273264--1273433	43	4.0	43	85	0	187	27	17	25	30	1.97
1274236--1274460	42	5.5	40	76	7	209	16	24	17	42	1.89
1274312--1274460	41	3.7	40	81	5	154	16	24	16	42	1.87
1274239--1274462	82	2.8	81	80	4	238	16	23	17	41	1.89
1274211--1274460	124	2.0	122	81	5	288	16	24	16	42	1.88
1274396--1274540	40	3.6	40	81	4	150	17	20	20	42	1.89
1282129--1282319	89	2.1	93	83	3	237	24	11	13	50	1.75
1282538--1282628	27	3.2	27	72	11	92	46	9	15	28	1.78
1282490--1282639	58	2.6	57	85	4	201	48	10	14	26	1.75
1282490--1282657	58	2.9	58	83	3	196	48	11	13	26	1.76
1282868--1282907	20	2.0	20	85	9	55	67	7	0	25	1.16
1285335--1285359	12	2.1	12	100	0	50	16	8	0	76	1.02
1287212--1287249	16	2.4	16	100	0	76	34	44	0	21	1.52
1287696--1287748	29	1.9	26	81	11	61	32	9	5	52	1.57
1289558--1289612	26	2.1	26	83	6	67	63	5	0	30	1.17
1289923--1290010	29	2.9	28	81	11	86	40	12	11	35	1.79
1294773--1294810	16	2.4	16	90	0	58	18	5	0	76	0.97
1294992--1295032	15	2.7	15	85	7	57	53	4	0	41	1.22
1296137--1296241	41	2.5	41	92	1	165	38	11	22	27	1.89
1303273--1303372	40	2.4	41	85	8	141	40	10	22	28	1.86
1303280--1303392	40	2.8	40	82	4	93	39	10	22	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303402--1303498	40	2.4	40	87	0	149	40	10	25	23	1.86
1305769--1305889	62	2.0	62	88	6	183	42	0	1	55	1.15
1305837--1305923	26	3.3	26	73	12	88	48	2	1	48	1.21
1306495--1306681	53	3.6	52	82	5	209	43	18	12	25	1.84
1310063--1310102	18	2.3	18	86	4	55	22	5	2	70	1.19
1314551--1314772	111	2.0	111	97	0	417	36	18	10	35	1.85
1315122--1315343	111	2.0	111	98	0	426	36	18	10	34	1.85
1314505--1315637	571	2.0	571	98	0	2203	30	23	16	30	1.96
1319970--1320007	20	1.9	20	94	0	67	47	21	5	26	1.71
1320464--1320507	18	2.4	19	84	7	63	36	0	2	61	1.09
1320457--1320506	25	2.0	26	84	11	68	36	0	2	62	1.07
1320622--1320666	23	2.0	22	87	12	65	71	0	0	28	0.87
1320849--1320943	44	2.1	46	84	7	124	32	4	27	35	1.76
1321023--1321161	59	2.4	57	84	8	174	51	2	0	46	1.18
1322147--1322212	21	3.2	21	64	23	59	50	12	9	28	1.70
1322134--1322236	40	2.5	40	92	3	170	48	9	8	33	1.67
1330791--1330860	6	12.0	6	76	11	74	41	1	2	54	1.24
1330780--1330865	17	4.6	17	74	17	73	39	1	3	55	1.24
1330775--1330858	11	7.4	11	79	11	55	36	1	3	58	1.23
1330791--1330846	23	2.4	23	90	0	85	41	0	3	55	1.17
1332299--1332390	29	3.1	29	80	9	105	33	28	2	35	1.69
1332299--1332391	30	3.1	30	81	7	109	33	27	2	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332349--1332421	30	2.4	30	84	8	87	34	20	4	41	1.72
1344407--1344623	115	1.9	115	91	0	353	36	19	21	23	1.95
1344523--1345503	194	5.0	194	85	5	1214	35	18	23	22	1.96
1345795--1345899	11	9.7	11	70	18	69	40	1	2	55	1.26
1345815--1345901	6	15.0	6	74	11	83	42	2	2	52	1.26
1345804--1345906	17	5.6	17	75	14	89	40	1	2	54	1.26
1345815--1345887	23	3.2	22	86	7	92	42	1	2	53	1.23
1347248--1347477	29	7.9	28	72	14	139	33	26	4	35	1.76
1347267--1347396	57	2.2	59	85	9	178	36	26	2	33	1.69
1347267--1347480	59	3.7	58	79	10	206	35	26	3	34	1.75

Tables:   1   2   3   4   5   6   7   8