genome.fa.s15381.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015381.1 Kokia drynarioides strain JFW-HI SEQ_130428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2291099

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 908 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1693719--1693783	32	2.0	32	96	0	121	24	24	3	47	1.66
1705277--1705309	12	2.9	11	91	8	57	81	0	18	0	0.68
1711563--1711646	43	2.0	43	97	0	159	33	7	20	39	1.80
1711727--1711752	2	13.0	2	100	0	52	50	0	0	50	1.00
1712167--1712294	62	2.0	63	91	7	208	32	14	25	28	1.94
1714261--1714382	24	5.1	24	87	0	181	55	5	9	29	1.54
1716208--1716270	24	2.6	25	90	9	105	52	3	14	30	1.57
1716922--1716966	21	2.1	21	91	0	72	40	4	22	33	1.74
1717156--1717224	36	1.9	36	96	0	129	26	13	26	34	1.92
1718384--1718854	238	2.0	237	92	1	782	33	14	18	33	1.91
1728295--1728378	43	2.0	43	87	0	123	34	7	17	40	1.77
1729022--1729168	73	2.0	73	100	0	294	42	9	6	40	1.64
1730357--1730412	21	2.6	22	77	2	60	37	16	17	28	1.91
1731603--1731634	10	3.3	10	91	8	57	46	0	0	53	1.00
1732576--1733391	405	2.0	404	98	0	1569	37	21	11	29	1.88
1733525--1733559	17	2.1	17	88	0	52	20	34	25	20	1.96
1735808--1735839	14	2.1	16	88	11	50	31	6	6	56	1.49
1743532--1743562	2	15.5	2	100	0	62	51	0	0	48	1.00
1743635--1743659	2	12.5	2	100	0	50	0	0	48	52	1.00
1743836--1743965	8	15.2	8	81	12	152	38	5	11	44	1.64
1743836--1743965	18	7.6	17	80	14	135	38	5	11	44	1.64
1743839--1743965	26	4.9	26	96	0	218	38	5	11	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752637--1752686	21	2.4	21	82	0	73	30	28	16	26	1.96
1753446--1753788	52	6.6	52	90	2	519	37	23	13	25	1.92
1760166--1760261	41	2.3	41	89	7	142	37	26	6	30	1.81
1764536--1764589	28	1.9	28	92	0	90	55	7	7	29	1.55
1764700--1764785	38	2.3	37	97	2	163	29	6	45	18	1.75
1769934--1770033	17	5.9	17	79	0	101	34	3	6	57	1.39
1769934--1770024	34	2.7	34	84	0	128	32	3	5	58	1.37
1770630--1770689	20	2.9	20	75	20	61	63	0	5	31	1.16
1770643--1770676	16	2.1	17	88	5	52	61	0	5	32	1.20
1774762--1774971	23	9.3	23	77	11	202	11	22	21	43	1.85
1774762--1774928	46	3.6	46	84	6	230	11	23	22	42	1.86
1774762--1774928	69	2.4	70	86	4	239	11	23	22	42	1.86
1785856--1785882	3	9.0	3	100	0	54	33	0	0	66	0.92
1802079--1802129	26	1.9	27	84	11	70	78	0	15	5	0.93
1802087--1802126	20	1.9	19	85	14	53	80	0	15	5	0.88
1807503--1807704	108	1.9	110	83	4	266	39	12	10	36	1.79
1807953--1808017	25	2.4	28	82	7	82	50	1	9	38	1.44
1809623--1809691	7	10.1	7	84	6	79	2	17	0	79	0.85
1809623--1809690	13	5.1	13	80	7	82	2	17	0	79	0.86
1812780--1812827	21	2.3	21	85	7	62	33	22	10	33	1.88
1816508--1816630	26	4.7	26	78	3	104	58	1	8	31	1.37
1816506--1816664	26	6.2	26	72	7	94	60	1	7	30	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816535--1816582	25	2.0	25	83	4	62	64	0	8	27	1.22
1828032--1828077	21	2.1	22	88	4	67	32	19	8	39	1.82
1831876--1831934	32	1.9	32	86	6	86	33	6	25	33	1.82
1835899--1835956	29	2.0	29	82	0	71	55	5	8	31	1.52
1836007--1836044	20	1.9	20	89	10	60	57	2	0	39	1.12
1843770--1843819	21	2.4	22	80	10	59	18	0	36	46	1.49
1843877--1843992	6	18.3	6	70	19	58	62	12	0	24	1.34
1843904--1843986	26	3.1	26	91	3	103	62	12	0	25	1.29
1843883--1843998	32	3.8	32	84	13	172	61	11	0	26	1.36
1846647--1846683	14	2.6	14	100	0	74	51	21	0	27	1.48
1847033--1847103	31	2.4	30	84	9	85	64	8	0	26	1.22
1847444--1847496	27	2.0	27	85	7	72	20	26	30	22	1.98
1847559--1847592	3	11.3	3	100	0	68	64	0	0	35	0.94
1860660--1860713	28	2.0	27	81	3	63	44	12	7	35	1.71
1862017--1862067	21	2.4	21	90	0	84	27	5	13	52	1.63
1866523--1866567	21	2.2	21	88	4	65	40	0	2	57	1.11
1867883--1867932	21	2.3	22	83	10	59	38	6	4	52	1.45
1867892--1867932	22	1.9	21	85	5	55	41	4	4	48	1.46
1869521--1869604	42	2.0	42	88	0	123	32	0	19	48	1.49
1870423--1870464	16	2.6	16	100	0	84	26	23	23	26	2.00
1870621--1870701	30	2.6	30	86	3	108	34	30	1	33	1.66
1871775--1871808	17	2.0	17	88	0	50	64	5	8	20	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1871846--1871884	20	2.0	20	85	5	53	12	7	17	61	1.54
1873437--1873528	38	2.4	38	81	3	96	38	34	14	13	1.84
1878741--1878821	30	2.6	30	86	3	108	34	30	1	33	1.66
1879895--1879928	17	2.0	17	88	0	50	64	5	8	20	1.43
1879966--1880004	20	2.0	20	85	5	53	12	7	17	61	1.54
1881557--1881648	38	2.4	38	81	3	96	38	34	14	13	1.84
1910719--1910755	12	3.2	12	85	14	51	32	5	0	62	1.18
1920327--1920376	18	2.7	19	76	14	52	38	2	2	58	1.21
1920331--1920393	24	2.7	24	78	7	67	39	3	1	55	1.25
1927067--1927105	19	2.0	20	90	5	62	51	0	0	48	1.00
1927046--1927093	24	2.0	24	84	8	62	47	0	2	50	1.12
1927202--1927232	2	15.5	2	100	0	62	48	0	0	51	1.00
1931550--1931593	21	2.1	21	86	0	61	34	2	4	59	1.30
1935732--1935773	3	14.0	3	100	0	84	33	0	33	33	1.58
1939516--1939568	26	2.1	24	83	13	63	28	1	3	66	1.20
1939523--1939579	25	2.2	26	79	17	66	28	0	3	68	1.06
1939526--1939579	23	2.3	25	78	9	60	29	0	3	66	1.09
1941033--1941061	14	2.0	15	93	6	51	55	0	3	41	1.17
1942787--1942832	19	2.4	19	88	3	65	54	0	0	45	0.99
1948279--1948316	17	2.2	18	85	4	51	23	23	2	50	1.62
1950513--1950557	23	1.9	23	86	13	65	53	8	13	24	1.68
1951341--1951385	23	2.0	23	86	8	65	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952096--1952120	6	4.2	6	100	0	50	52	0	0	48	1.00
1958426--1958490	29	2.2	28	86	10	87	27	10	29	32	1.90
1958553--1958790	59	4.0	59	89	4	331	33	1	28	36	1.67
1958553--1958790	29	8.1	29	83	7	268	33	1	28	36	1.67
1959782--1959817	18	2.0	18	88	0	54	38	0	0	61	0.96
1960521--1960595	17	4.3	17	77	5	69	53	1	1	44	1.17
1962838--1962907	25	2.7	26	85	10	99	44	2	5	47	1.41
1963045--1963136	42	2.2	42	76	3	96	59	8	4	27	1.46
1963589--1963695	42	2.5	43	87	6	155	26	3	5	64	1.32
1963816--1963892	25	3.0	25	77	11	84	49	3	3	42	1.39
1965555--1965625	29	2.5	28	79	2	70	40	1	5	52	1.34
1978835--1979008	87	2.0	87	100	0	348	35	13	13	36	1.85
1985534--1985561	3	9.3	3	100	0	56	32	0	0	67	0.91
1992413--1992439	3	9.0	3	100	0	54	33	0	66	0	0.92
1994446--1994490	20	2.4	18	81	7	54	46	0	0	53	1.00
1994680--1994713	3	11.3	3	100	0	68	67	0	0	32	0.91
1996953--1997054	38	2.7	38	87	1	132	24	17	21	36	1.95
2000431--2000464	3	11.3	3	93	0	59	0	38	0	61	0.96
2005988--2006030	17	2.5	17	76	3	50	23	4	6	65	1.37
2009274--2009354	39	2.1	39	84	9	103	44	0	3	51	1.19
2009275--2009348	28	2.6	29	78	14	84	44	0	2	52	1.15
2009280--2009348	19	3.6	19	76	18	72	43	0	2	53	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2009574--2009600	8	3.4	8	100	0	54	37	0	0	62	0.95
2011554--2011598	24	2.0	22	83	16	56	64	4	8	22	1.40
2012004--2012060	18	3.2	17	78	11	60	68	0	1	29	1.00
2012006--2012058	19	2.9	18	84	13	65	67	0	1	30	1.01
2020279--2020329	26	1.9	27	84	11	70	60	11	5	21	1.52
2026426--2026454	6	4.8	6	100	0	58	0	0	68	31	0.89
2026588--2026613	3	8.7	3	100	0	52	34	30	0	34	1.58
2033259--2033303	17	2.5	18	85	7	56	11	15	2	71	1.24
2036237--2036279	21	2.0	21	90	0	68	18	18	30	32	1.95
2040651--2040680	15	2.0	15	93	0	51	26	3	3	66	1.23

Tables:   1   2   3   4   5   6   7   8