genome.fa.s15381.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015381.1 Kokia drynarioides strain JFW-HI SEQ_130428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2291099

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 908 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042783--2043011	114	2.0	114	100	0	458	32	20	6	40	1.77
2044168--2044210	18	2.4	18	88	7	61	46	0	0	53	1.00
2046362--2046395	17	1.9	18	94	5	61	47	29	11	11	1.76
2050203--2050257	16	3.5	15	78	9	56	47	1	16	34	1.57
2050489--2050564	34	2.3	33	93	2	125	36	1	1	60	1.13
2052838--2052940	32	3.2	30	72	18	91	56	1	3	37	1.29
2054559--2054589	2	16.0	2	93	6	55	51	0	0	48	1.00
2066928--2066989	26	2.3	26	78	8	63	33	1	22	41	1.64
2067571--2067601	4	7.8	4	100	0	62	51	0	22	25	1.48
2073758--2073785	13	2.2	13	100	0	56	32	14	17	35	1.90
2082789--2082836	24	2.0	24	91	0	78	43	2	2	52	1.24
2086465--2086504	21	2.0	21	90	5	64	62	2	2	32	1.22
2086796--2086822	2	13.5	2	100	0	54	0	48	0	51	1.00
2095093--2095146	23	2.2	26	77	12	60	29	5	11	53	1.59
2098391--2098428	18	2.1	18	90	0	58	47	0	28	23	1.52
2100712--2100756	23	2.0	22	86	4	63	42	33	2	22	1.66
2100757--2100791	18	2.0	18	88	5	54	34	25	5	34	1.80
2106731--2106792	31	2.0	31	100	0	124	22	6	22	48	1.73
2112557--2112582	10	2.6	10	100	0	52	11	7	0	80	0.89
2124584--2124618	16	2.2	16	90	10	54	40	17	22	20	1.92
2129990--2130138	59	2.5	58	80	9	142	41	20	17	20	1.90
2132116--2132151	18	1.9	19	94	5	65	41	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2132134--2132197	22	2.7	25	73	14	71	40	3	1	54	1.25
2133992--2134018	14	1.9	14	100	0	54	59	0	0	40	0.98
2146097--2146142	25	1.9	23	86	8	65	36	4	4	54	1.40
2147200--2147242	20	2.3	19	84	8	61	25	2	2	69	1.12
2147201--2147261	21	3.2	18	73	15	50	24	3	1	70	1.11
2147232--2147263	14	2.4	13	90	10	55	25	3	0	71	1.00
2150095--2150146	6	9.0	6	80	14	56	26	1	0	71	0.97
2151039--2151106	11	5.5	11	74	19	55	79	1	13	5	0.98
2151081--2151113	16	2.0	17	88	5	50	87	3	9	0	0.63
2151041--2151106	12	5.2	12	78	10	60	80	1	12	6	0.96
2152134--2152179	25	1.9	23	86	8	65	34	4	6	54	1.46
2152559--2152597	14	2.7	15	80	8	53	25	7	10	56	1.59
2159460--2159501	14	3.1	14	82	3	50	64	0	0	35	0.94
2166884--2167273	194	2.0	194	93	0	672	37	22	15	24	1.93
2169327--2169352	6	4.3	6	100	0	52	34	50	0	15	1.45
2171226--2171307	42	1.9	43	82	7	105	57	13	0	29	1.37
2172628--2172684	16	3.4	16	79	13	62	54	1	0	43	1.10
2174802--2174914	56	2.0	56	98	0	217	28	20	15	35	1.94
2177126--2177178	21	2.5	21	81	0	61	35	16	11	35	1.85
2187779--2187819	22	1.9	21	90	5	64	60	2	2	34	1.23
2187783--2187827	22	2.0	22	82	0	54	60	2	2	35	1.22
2194285--2194406	62	2.0	63	85	1	165	45	7	13	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2209344--2209375	7	4.6	7	96	0	55	53	0	46	0	1.00
2209344--2209382	14	2.8	14	88	0	60	48	0	51	0	1.00
2211884--2211947	28	2.3	28	77	0	74	45	6	3	45	1.44
2212122--2212177	13	4.3	13	71	8	51	35	0	1	62	1.06
2214089--2214135	22	2.1	22	84	7	60	14	12	2	70	1.26
2216440--2216490	22	2.3	22	93	0	84	35	5	11	47	1.65
2219896--2219931	18	2.0	18	94	0	63	52	2	0	44	1.15
2220039--2220068	14	2.1	14	93	0	51	63	6	0	30	1.20
2219940--2220171	96	2.4	96	89	0	349	50	8	7	34	1.60
2220102--2220254	83	1.8	83	92	0	261	52	6	4	35	1.48
2223307--2223342	16	2.2	17	95	5	65	63	0	36	0	0.94
2223131--2223484	192	1.8	193	90	1	577	41	18	16	23	1.90
2225614--2225650	18	2.1	18	89	0	56	45	2	2	48	1.30
2245846--2245891	24	1.9	24	86	0	65	60	8	0	30	1.26
2247162--2247189	3	9.3	3	100	0	56	35	0	0	64	0.94
2247902--2247977	20	3.7	20	79	10	98	56	3	0	39	1.18
2247882--2247970	43	2.1	43	97	0	169	57	2	1	39	1.19
2251857--2251884	11	2.5	11	100	0	56	0	7	0	92	0.37
2274591--2274650	20	3.1	20	64	7	52	33	1	6	58	1.34
2277469--2277614	73	2.0	73	84	0	193	41	18	10	29	1.83
2279611--2279702	45	2.0	45	89	4	141	25	28	13	33	1.93
2281903--2281932	12	2.5	12	94	0	51	66	6	0	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2281907--2281936	9	3.3	9	90	0	51	66	6	0	26	1.16
2285221--2285270	20	2.5	20	100	0	100	32	30	28	10	1.89

Tables:   1   2   3   4   5   6   7   8

The End!