genome.fa.s15381.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015381.1 Kokia drynarioides strain JFW-HI SEQ_130428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2291099

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 908 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897476--897977	59	8.5	58	80	9	491	38	24	0	36	1.61
901830--902212	191	2.0	191	100	0	766	32	15	23	28	1.95
904897--905620	209	3.5	208	88	1	1022	36	16	22	25	1.94
906813--906853	21	2.0	21	90	0	64	63	0	9	26	1.25
906897--907110	30	7.2	29	83	8	218	37	27	0	34	1.64
906897--907110	59	3.6	58	80	12	220	37	27	0	34	1.64
910476--910529	23	2.3	23	90	3	81	29	3	40	25	1.73
913146--913175	13	2.2	14	94	5	53	13	26	0	60	1.34
913330--913376	23	2.0	24	83	8	60	27	0	0	72	0.85
914138--914226	43	2.1	43	86	0	124	32	24	11	31	1.90
916863--917437	49	11.7	49	75	4	496	22	27	14	35	1.93
916863--917438	98	5.9	98	86	0	738	22	27	14	35	1.93
918453--918523	29	2.4	29	85	2	88	39	5	22	32	1.77
920233--921059	208	4.0	208	86	1	1109	22	20	17	39	1.92
920561--920720	85	1.9	85	84	5	216	24	20	14	40	1.90
920769--920930	85	1.9	85	82	2	200	23	19	14	41	1.89
920854--921300	122	3.7	121	87	3	587	21	20	17	40	1.92
920854--921300	120	3.7	120	87	5	553	21	20	17	40	1.92
920854--921300	242	1.8	241	85	4	630	21	20	17	40	1.92
921220--921385	85	2.0	85	86	2	235	24	21	15	38	1.92
921097--921889	208	3.8	209	88	2	1089	23	20	16	38	1.92
922862--922958	46	2.1	47	83	9	128	12	18	11	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929812--930074	60	4.4	59	78	6	235	38	2	22	36	1.68
929812--930074	90	2.9	90	78	5	248	38	2	22	36	1.68
929812--930019	30	6.9	31	79	10	175	39	2	22	36	1.67
947084--947223	37	3.8	36	83	3	181	35	22	12	28	1.91
947308--947991	23	29.7	23	85	0	821	47	13	5	33	1.64
957430--957529	52	1.9	52	89	0	155	29	15	23	33	1.94
966146--966297	77	2.0	77	93	0	259	22	19	21	37	1.94
967761--967800	21	1.9	21	94	0	71	20	22	15	42	1.88
970954--970994	17	2.4	17	80	19	50	51	17	14	17	1.77
997362--997462	47	2.1	47	90	0	157	46	24	14	13	1.82
999552--999652	38	2.7	38	77	8	109	31	32	10	24	1.90
1005999--1006089	25	3.6	24	82	4	101	28	24	20	26	1.99
1007585--1007634	25	2.0	25	92	0	82	48	24	0	28	1.52
1008252--1008288	19	1.9	19	100	0	74	43	10	13	32	1.79
1009643--1009690	21	2.3	21	85	0	60	33	27	8	31	1.86
1010603--1010759	50	3.1	49	83	1	161	32	27	15	24	1.96
1010603--1010759	25	6.3	25	79	5	138	32	27	15	24	1.96
1012901--1012939	19	2.1	19	95	0	69	43	10	12	33	1.77
1018348--1018408	6	10.3	6	87	3	79	18	1	3	77	0.99
1018348--1018409	17	3.5	17	84	6	79	19	1	3	75	1.02
1019303--1019387	9	9.6	9	74	14	70	76	1	17	4	1.02
1020419--1020464	25	1.9	25	86	8	69	32	4	6	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022002--1022042	21	2.0	21	85	9	57	31	26	14	26	1.95
1022893--1022947	26	2.1	26	86	0	74	36	23	16	23	1.94
1022911--1023156	25	9.8	25	79	5	228	35	25	15	22	1.94
1022974--1023164	25	7.6	25	86	0	229	35	25	16	23	1.95
1027992--1028037	22	2.1	22	91	0	74	41	15	8	34	1.78
1037257--1037314	24	2.5	24	75	5	57	63	5	20	10	1.44
1037535--1037561	14	1.9	14	100	0	54	44	11	0	44	1.39
1040397--1040457	31	2.0	31	83	6	79	49	1	1	47	1.21
1040397--1040464	30	2.2	32	82	7	79	50	1	1	47	1.19
1043604--1044054	29	14.9	29	69	14	250	21	16	11	49	1.78
1043604--1044266	57	10.8	57	76	13	425	22	17	11	49	1.78
1043784--1043938	40	4.2	40	66	17	98	21	18	12	47	1.81
1043769--1044266	69	7.7	68	78	15	506	22	17	10	48	1.78
1043895--1044075	86	2.1	86	87	0	254	22	18	10	49	1.77
1043893--1044075	29	6.4	29	80	2	181	22	18	10	48	1.78
1043653--1044266	252	2.4	252	95	1	1077	22	17	11	49	1.78
1044145--1044265	29	4.2	29	88	2	145	23	16	9	50	1.75
1043653--1044270	126	4.9	122	73	14	533	22	17	11	48	1.78
1044507--1044562	29	1.9	29	88	0	85	35	3	16	44	1.65
1044461--1044612	75	2.0	74	82	3	180	36	5	14	42	1.70
1044535--1044702	91	1.9	90	85	1	237	36	4	15	44	1.66
1044535--1044703	45	3.7	45	83	0	203	36	4	15	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044671--1044727	29	2.0	29	89	0	87	35	1	15	47	1.56
1044619--1044856	74	3.1	76	76	10	248	35	5	15	43	1.69
1044709--1044994	45	6.5	43	77	8	208	36	6	14	42	1.71
1044741--1044816	38	2.0	37	92	2	125	36	6	14	42	1.72
1044775--1044995	90	2.5	90	86	2	302	36	5	15	42	1.71
1044779--1044995	45	4.8	45	80	0	227	36	5	15	42	1.71
1044964--1045019	29	1.9	29	96	0	103	39	1	14	44	1.55
1044918--1045069	74	2.1	74	88	0	223	36	3	15	45	1.62
1044828--1045158	164	2.0	164	86	1	466	36	5	15	43	1.69
1044993--1045244	45	5.6	45	82	0	279	37	4	14	42	1.67
1044884--1045368	119	3.9	119	76	9	414	36	4	15	42	1.68
1044992--1045242	90	2.8	90	86	0	340	37	4	14	43	1.67
1044536--1045413	254	3.5	253	84	3	970	36	5	15	42	1.69
1045082--1045538	164	2.8	164	90	0	709	37	5	15	42	1.69
1045218--1045273	29	2.0	26	83	10	67	35	3	17	42	1.67
1045248--1045413	45	3.7	45	88	0	233	37	4	16	41	1.69
1045382--1045442	29	2.1	29	90	0	95	36	1	18	44	1.59
1045292--1045531	119	2.0	119	89	1	365	37	4	15	42	1.67
1045337--1045487	74	2.0	74	88	0	221	37	3	15	43	1.64
1045411--1045540	45	2.9	45	91	0	197	36	5	15	42	1.70
1053189--1053233	16	2.8	16	83	6	56	66	4	8	20	1.36
1054813--1054850	18	2.1	18	90	0	58	44	7	0	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055300--1055350	14	3.6	14	87	7	77	27	0	1	70	0.98
1055292--1055350	28	2.1	28	84	6	75	27	3	1	67	1.16
1055305--1055356	7	7.3	7	81	12	52	25	0	1	73	0.94
1055300--1055347	15	3.3	14	83	11	53	29	0	2	68	1.01
1055946--1055983	17	2.2	17	86	9	51	31	0	2	65	1.06
1055955--1056013	23	2.6	21	77	17	57	28	1	3	66	1.18
1056256--1056291	17	2.1	17	90	10	56	27	0	0	72	0.85
1062519--1062570	25	2.2	25	86	6	72	40	1	1	55	1.22
1069778--1070007	111	2.1	112	94	1	399	30	20	7	41	1.80
1072508--1072550	18	2.4	18	88	7	61	46	0	0	53	1.00
1078619--1078721	36	2.9	35	86	4	143	34	22	12	30	1.91
1078801--1079134	23	14.6	23	84	0	418	47	13	4	35	1.63
1078801--1079134	46	7.3	46	90	0	499	47	13	4	35	1.63
1080533--1080731	53	3.8	53	85	1	265	29	14	19	36	1.91
1080531--1080773	106	2.3	106	81	7	287	30	14	19	36	1.91
1080531--1080773	53	4.6	53	79	6	215	30	14	19	36	1.91
1090359--1090416	12	4.9	12	77	14	50	58	0	37	3	1.15
1091527--1091717	53	3.6	53	87	0	274	31	15	17	35	1.92
1091507--1091751	53	4.6	52	80	4	231	30	13	19	35	1.91
1091507--1091751	106	2.3	105	80	3	303	30	13	19	35	1.91
1096897--1096993	48	2.0	48	100	0	194	42	24	12	20	1.87
1098260--1098294	16	2.1	18	89	10	56	51	14	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100566--1100731	18	9.2	18	79	0	125	22	19	23	33	1.97
1100567--1100692	36	3.5	36	83	0	153	21	20	22	35	1.96
1100566--1100692	54	2.4	54	82	0	164	22	20	22	35	1.96
1105447--1105500	6	8.8	6	77	4	54	14	3	5	75	1.12
1112031--1112198	49	3.3	49	74	16	142	39	20	5	33	1.77
1112178--1112214	10	3.6	10	88	3	56	40	21	2	35	1.68
1112129--1112246	59	2.0	60	90	5	186	38	20	5	35	1.75
1113797--1113823	10	2.7	10	100	0	54	48	22	0	29	1.51
1113749--1113843	48	2.0	48	89	0	145	41	17	4	36	1.69
1113760--1113829	24	2.9	23	75	8	68	42	18	2	35	1.65

Tables:   1   2   3   4   5   6   7   8