genome.fa.s121.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold121
Parameters: 2 7 7 80 10 50 1000
Length:  1076282

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290729--290983	84	3.0	84	81	1	224	18	29	17	34	1.94
291521--291563	6	7.2	6	79	10	52	83	0	0	16	0.64
291522--291559	19	2.0	20	94	5	69	84	0	0	15	0.63
291576--291610	4	8.8	4	93	0	61	54	0	0	45	0.99
292044--292140	44	2.2	44	90	0	149	37	18	21	22	1.95
292044--292125	22	3.7	22	96	0	155	36	17	23	23	1.94
296358--296405	2	24.0	2	91	0	78	50	0	0	50	1.00
296459--296497	2	19.5	2	89	0	60	46	0	2	51	1.14
298436--298474	19	2.0	19	85	5	51	66	5	2	25	1.25
301776--301805	9	3.3	9	90	0	51	13	16	23	46	1.82
308706--308751	21	2.2	20	82	14	58	26	17	15	41	1.88
312226--312727	81	6.1	81	91	2	736	22	11	35	29	1.89
313401--313461	13	4.6	13	74	15	54	67	0	0	32	0.91
313402--313481	18	4.7	18	66	26	57	67	0	0	32	0.91
313404--313480	19	4.1	18	82	16	68	67	0	0	32	0.91
313428--313481	19	2.8	19	86	8	74	66	0	0	33	0.92
313515--313544	2	15.0	2	100	0	60	0	50	0	50	1.00
313544--313568	2	12.5	2	100	0	50	48	0	0	52	1.00
314277--314336	17	3.8	17	74	14	56	58	0	0	41	0.98
314285--314328	19	2.3	19	84	7	54	61	0	0	38	0.96
314303--314337	11	3.0	11	84	15	52	62	0	0	37	0.95
314423--314467	2	22.5	2	100	0	90	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314627--314681	28	1.9	28	92	3	92	34	1	0	63	1.05
314668--314692	6	4.2	6	100	0	50	16	0	0	84	0.63
314622--314688	29	2.3	29	82	5	91	31	1	0	67	1.00
314639--314724	37	2.2	40	84	14	108	27	3	1	67	1.14
314790--314851	30	2.1	29	87	3	88	59	0	1	38	1.07
314790--314858	29	2.3	30	85	2	86	56	0	4	39	1.19
315884--315970	22	4.1	21	79	10	79	64	0	1	34	1.01
316456--316484	14	2.1	14	93	6	51	0	20	0	79	0.74
316480--316529	17	3.0	16	82	8	55	28	6	2	64	1.28
316482--316542	17	3.5	17	75	16	54	29	8	1	60	1.35
316607--316668	9	7.1	9	77	15	51	24	0	3	72	0.99
316607--316690	18	4.6	18	73	21	77	28	1	2	67	1.10
316612--316668	27	2.1	27	90	0	87	22	0	3	73	0.98
316934--316975	22	2.0	22	85	4	59	54	2	0	42	1.13
317191--317224	14	2.3	15	90	5	52	61	0	29	8	1.26
317661--317685	7	3.6	7	100	0	50	48	12	0	40	1.40
318464--318494	14	2.2	14	94	0	53	61	0	0	38	0.96
318457--318538	24	3.5	24	79	11	80	57	1	0	41	1.06
318481--318581	8	11.8	9	70	17	56	49	1	0	48	1.12
320591--320651	26	2.3	26	80	5	70	40	0	0	59	0.98
320722--320776	23	2.4	22	77	14	58	58	1	5	34	1.32
321324--321354	2	15.5	2	93	0	53	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321328--321362	14	2.5	14	90	0	52	0	40	5	54	1.24
327174--327202	12	2.3	13	94	5	51	27	0	0	72	0.85
329734--329779	20	2.3	20	85	14	60	67	8	4	19	1.35
330479--330532	23	2.5	20	77	19	54	46	0	3	50	1.19
332459--332508	26	1.9	26	84	15	68	56	6	2	36	1.36
333082--333132	21	2.5	20	80	6	57	31	0	3	64	1.11
333281--333310	14	2.1	14	93	0	51	46	0	0	53	1.00
334361--334404	3	14.7	3	100	0	88	34	0	0	65	0.93
336925--336962	20	1.9	20	89	10	60	42	2	2	52	1.29
337112--337146	16	2.2	16	89	0	52	57	2	0	40	1.14
339751--340342	85	7.0	84	84	1	675	17	29	18	34	1.94
339764--340377	42	14.6	42	72	9	363	17	29	18	34	1.94
339761--340384	84	7.4	84	83	2	617	17	29	18	34	1.94
339751--340459	126	5.6	127	73	9	455	18	29	18	34	1.94
341516--341722	20	10.8	20	71	16	161	41	8	27	22	1.83
341521--341722	39	5.3	39	83	4	286	41	8	27	23	1.83
341504--341722	76	2.9	76	95	0	393	41	8	27	23	1.82
342548--342598	20	2.5	20	78	12	52	17	0	13	68	1.21
345451--345495	23	2.0	23	82	8	56	71	4	2	22	1.15
347226--347266	7	6.0	7	94	5	75	0	29	0	70	0.87
348461--348538	25	3.4	23	73	16	81	56	2	2	38	1.27
348518--348575	14	3.9	14	73	22	55	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349222--349271	20	2.5	20	83	3	64	30	2	2	66	1.14
349674--349703	2	15.0	2	100	0	60	0	50	0	50	1.00
350421--350461	2	20.5	2	100	0	82	48	0	0	51	1.00
350496--350535	14	2.9	14	76	0	53	35	0	12	52	1.39
350496--350550	28	2.0	28	85	7	76	32	1	12	52	1.50
357783--357809	2	13.5	2	100	0	54	48	0	0	51	1.00
359352--359377	3	8.7	3	100	0	52	30	0	0	69	0.89
360006--360092	44	2.0	44	84	13	117	57	4	1	36	1.27
360527--360597	24	3.0	23	77	10	72	52	0	0	47	1.00
360568--360603	16	2.2	16	90	9	56	52	0	0	47	1.00
360646--360692	22	2.1	23	81	18	64	38	0	0	61	0.96
360672--360755	16	5.1	16	70	25	59	46	1	0	52	1.08
360711--360757	19	2.4	21	86	13	73	51	0	0	48	1.00
361168--361215	21	2.3	20	82	10	60	45	2	0	52	1.12
361670--361700	3	10.3	3	100	0	62	67	0	0	32	0.91
363214--363239	2	13.0	2	100	0	52	50	0	0	50	1.00
364595--364620	3	8.7	3	100	0	52	0	69	0	30	0.89
365193--365247	26	2.2	26	83	9	69	43	1	5	49	1.36
365643--365685	22	2.0	21	86	13	61	65	2	0	32	1.06
366348--366417	30	2.3	30	82	4	79	48	0	1	50	1.09
369546--369713	51	3.3	51	79	5	203	33	11	26	27	1.92
369703--369774	27	2.7	26	85	10	83	20	19	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372307--372374	19	3.9	18	76	23	83	38	14	11	35	1.83
372329--372353	13	1.9	13	100	0	50	32	16	16	36	1.90
372310--372372	32	2.0	32	96	0	117	36	15	12	34	1.86
377909--377970	17	3.7	17	72	25	60	41	0	0	58	0.98
377920--377991	32	2.2	32	80	7	83	38	1	2	56	1.22
378008--378053	11	4.1	11	77	22	51	30	0	0	69	0.89
379521--379558	2	19.0	2	100	0	76	50	0	0	50	1.00
380793--381036	100	2.5	95	80	12	278	35	10	23	30	1.89
383315--383361	20	2.3	20	85	3	58	36	17	8	38	1.80
383323--383362	20	2.0	21	90	5	64	35	15	7	42	1.75
385035--385082	21	2.3	21	92	0	78	31	16	27	25	1.97
386451--386510	15	4.1	15	80	6	70	46	0	1	51	1.10
386451--386510	7	8.3	7	75	3	57	46	0	1	51	1.10
387097--387154	24	2.5	23	81	10	66	53	0	0	46	1.00
387394--387435	2	21.0	2	95	0	75	47	0	2	50	1.14
388265--388365	50	2.0	49	94	1	175	47	10	14	26	1.78
388430--388486	26	2.1	28	84	12	75	54	1	5	38	1.33
388437--388492	25	2.1	27	81	12	64	57	1	5	35	1.32
389860--389896	2	18.5	2	100	0	74	51	0	0	48	1.00
390390--390427	8	5.0	8	96	3	62	60	0	0	39	0.97
390382--390428	7	6.6	7	90	9	69	59	0	0	40	0.97
392610--392639	15	1.9	16	93	6	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393410--393450	20	2.0	20	86	9	57	48	0	0	51	1.00
393446--393486	18	2.1	18	86	13	55	60	0	0	39	0.96
395237--395264	4	7.0	4	100	0	56	75	0	0	25	0.81
401932--402060	52	2.5	52	94	0	231	27	17	19	35	1.94
402069--402093	13	1.9	13	100	0	50	36	16	16	32	1.90
404033--404173	52	2.7	52	91	0	201	27	13	29	29	1.94
404129--404215	42	2.1	42	88	0	129	28	12	31	27	1.93
409969--410030	28	2.2	28	97	0	115	35	30	9	24	1.87
412093--412132	21	2.0	21	90	5	64	42	15	17	25	1.88
413018--413198	52	3.5	51	81	6	199	44	10	14	29	1.79

Tables:   1   2   3   4   5   6   7   8