genome.fa.s121.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold121
Parameters: 2 7 7 80 10 50 1000
Length:  1076282

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413789--414236	156	2.9	156	80	3	499	35	15	24	24	1.94
413788--414236	52	8.7	52	77	3	350	35	15	24	24	1.94
414335--414670	64	5.2	64	83	3	354	20	15	32	31	1.94
414310--414670	32	11.2	32	82	5	298	20	15	32	31	1.94
414338--414655	96	3.3	96	81	3	370	18	15	33	32	1.92
414654--414883	32	7.6	31	80	7	217	36	11	26	25	1.90
414678--414959	119	2.3	115	76	11	264	35	10	27	25	1.90
414658--415157	32	17.0	28	74	8	168	35	11	27	25	1.90
414921--415068	27	5.3	27	77	9	127	32	11	30	25	1.91
414969--415094	60	2.1	58	86	5	173	34	11	30	22	1.90
414969--415150	60	3.1	57	79	9	154	35	11	29	23	1.90
415152--415226	31	2.5	30	78	4	78	29	13	28	29	1.94
414634--415218	32	19.7	30	69	16	92	34	12	27	25	1.92
416017--416070	19	2.7	21	82	5	76	40	12	14	31	1.84
416098--416130	17	1.9	17	100	0	66	36	18	12	33	1.88
420174--420206	17	1.9	17	100	0	66	0	0	9	90	0.44
420173--420206	11	3.2	11	87	4	52	0	0	8	91	0.43
425166--425282	45	2.6	45	90	0	189	53	21	1	23	1.55
425196--425264	22	3.1	22	70	17	70	55	15	1	27	1.50
425406--425486	42	1.9	42	92	0	135	50	27	16	6	1.68
425445--425511	30	2.2	30	83	0	89	49	26	16	7	1.72
425495--425529	18	1.9	18	94	0	61	48	22	20	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425451--425547	24	4.0	24	69	19	76	47	25	18	8	1.76
427178--427216	20	2.0	20	90	5	62	53	0	7	38	1.30
429440--429475	15	2.3	16	90	4	56	16	0	5	77	0.94
429440--429482	8	5.6	7	84	15	50	13	0	6	79	0.93
432607--432675	31	2.2	32	87	7	97	40	17	14	27	1.88
436057--436086	2	15.0	2	92	0	51	53	0	0	46	1.00
437537--437570	10	3.3	10	84	8	50	79	2	17	0	0.86
437832--437866	15	2.3	15	95	0	61	82	0	17	0	0.66
438835--438981	25	6.1	25	67	20	75	47	0	0	52	1.00
438875--438993	33	3.3	36	80	15	124	42	0	0	57	0.99
438875--438956	15	5.1	15	72	12	65	40	0	0	59	0.97
438875--438952	33	2.4	33	97	0	147	38	0	0	61	0.96
439842--439889	15	3.1	16	82	11	64	60	0	2	37	1.09
439925--439950	13	2.0	13	100	0	52	61	0	0	38	0.96
440601--440627	14	1.9	14	100	0	54	74	0	0	25	0.83
441359--441404	17	2.9	15	78	12	56	50	0	0	50	1.00
441359--441399	17	2.6	16	84	7	57	46	0	0	53	1.00
442013--442072	18	3.4	18	78	15	63	65	0	0	35	0.93
442020--442072	21	2.7	21	77	16	60	62	0	0	37	0.96
441659--442535	314	2.8	312	88	6	1263	50	7	4	36	1.51
442346--442386	20	2.0	20	85	4	55	63	0	0	36	0.95
442349--442387	19	2.1	19	86	13	55	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442728--442777	22	2.3	22	79	6	57	70	8	0	22	1.13
442934--442976	19	2.3	19	87	0	59	55	2	0	41	1.12
443047--443096	12	4.1	12	82	14	66	74	2	0	24	0.93
443037--443088	16	3.2	16	76	10	52	73	1	0	25	0.94
443033--443137	26	4.0	26	78	13	90	66	1	0	31	1.02
443141--443182	18	2.2	19	87	8	59	19	9	0	71	1.13
443698--443735	15	2.5	15	83	12	51	26	0	2	71	1.00
443688--443776	25	3.7	24	77	11	67	25	1	5	67	1.19
443702--443777	23	3.7	21	75	16	70	26	1	3	68	1.15
444752--444796	23	2.0	21	83	8	54	17	6	6	68	1.33
446910--447011	14	7.2	14	75	6	82	38	3	6	50	1.47
446915--447011	28	3.4	27	82	10	115	39	4	6	50	1.47
446851--447017	29	5.8	28	74	12	101	35	5	7	51	1.54
448671--448697	2	13.5	2	100	0	54	48	0	0	51	1.00
450018--450055	15	2.4	17	86	8	53	15	0	28	55	1.41
454882--455040	79	2.0	79	98	0	309	38	5	22	33	1.78
455825--455854	15	2.0	15	100	0	60	13	6	20	60	1.55
456918--456960	2	22.0	2	95	4	79	51	0	0	48	1.00
457640--457683	23	1.9	23	86	9	63	59	0	0	40	0.98
460192--460242	25	2.0	25	92	0	84	23	11	15	49	1.78
462684--462796	52	2.2	52	82	1	147	30	28	8	32	1.87
462778--462859	28	2.9	29	75	8	89	23	28	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462806--462986	79	2.3	79	81	1	229	27	23	13	34	1.93
467077--467244	79	2.1	79	83	8	218	35	16	22	25	1.95
467149--467517	130	2.8	129	80	8	442	34	12	24	28	1.92
467230--467346	51	2.3	51	83	0	144	29	12	27	29	1.93
467279--467424	79	1.8	79	85	2	204	31	11	26	30	1.92
467361--467475	51	2.3	50	87	3	158	33	10	23	32	1.89
467916--467957	19	2.2	20	87	12	61	33	21	0	45	1.52
469791--469828	2	19.0	2	100	0	76	50	0	0	50	1.00
473159--473222	22	3.1	22	78	8	64	42	1	3	53	1.26
473472--473531	28	2.3	28	86	11	83	50	0	0	50	1.00
473472--473531	25	2.4	25	86	8	79	50	0	0	50	1.00
473946--474021	28	2.6	29	75	10	75	44	0	1	53	1.08
473954--474045	30	3.2	28	75	13	80	48	0	1	50	1.08
474077--474125	24	2.1	23	84	3	62	51	0	0	48	1.00
474913--474959	15	3.0	16	81	6	60	74	6	0	19	1.03
474926--474964	15	2.7	14	88	7	60	71	7	0	20	1.10
475045--475086	17	2.7	15	85	10	50	50	0	0	50	1.00
475231--475265	18	1.9	18	88	11	54	68	0	2	28	1.04
475324--475444	58	2.1	59	82	3	147	38	9	4	48	1.54
475701--475744	16	2.6	17	79	13	56	47	0	0	52	1.00
476096--476134	9	4.3	9	80	0	51	0	23	0	76	0.78
479428--479485	14	4.3	13	85	12	73	0	15	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479428--479485	21	2.8	20	82	14	73	0	15	0	84	0.62
479449--479497	15	3.1	16	88	5	73	0	18	0	81	0.69
479430--479502	31	2.2	33	81	13	89	0	20	0	79	0.73
479428--479492	14	4.9	14	71	21	68	0	16	0	83	0.66
479428--479504	28	2.8	28	80	7	86	0	20	0	79	0.74
479731--479784	19	2.9	18	82	15	58	29	0	0	70	0.88
479735--479795	27	2.3	27	86	11	81	36	0	0	63	0.94
479729--479810	41	2.1	39	82	8	96	32	0	0	67	0.91
479849--479896	25	1.9	25	86	0	69	56	0	0	43	0.99
482008--482062	19	2.8	19	83	5	65	41	12	16	29	1.85
486120--486177	18	3.2	18	82	0	71	34	8	6	50	1.60
488991--489048	18	3.2	18	78	9	73	36	10	8	44	1.69
489484--489534	20	2.6	19	87	12	68	33	15	17	33	1.92
495821--495870	21	2.4	22	83	9	61	32	20	0	48	1.50
498227--498280	20	2.7	20	91	0	81	33	14	16	35	1.90
499287--499331	2	23.5	2	91	8	76	51	0	0	48	1.00
499967--500006	20	2.0	21	85	5	55	60	0	5	35	1.19
501323--501385	24	2.6	24	70	12	56	58	4	3	33	1.35
504783--504867	42	2.0	42	93	0	143	36	30	9	23	1.87
505292--505316	12	2.1	12	100	0	50	44	8	16	32	1.76
505377--505401	13	1.9	13	100	0	50	36	16	16	32	1.90
505443--505497	20	2.8	20	77	0	65	21	14	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507846--508183	52	6.4	50	70	18	168	30	26	12	31	1.92
507955--508030	27	2.8	25	88	9	98	25	34	19	21	1.96
508016--508187	52	3.3	52	80	6	213	29	27	10	31	1.90
507841--508291	212	2.1	211	89	2	683	28	27	13	30	1.94
508196--508399	79	2.6	79	79	5	225	24	29	17	28	1.97
510335--510386	20	2.6	20	84	0	59	44	3	17	34	1.67
510499--510575	31	2.5	31	82	6	93	28	12	15	42	1.84
512947--513164	97	2.2	97	86	1	294	29	24	11	34	1.91
516088--516131	15	3.0	14	80	9	52	75	0	25	0	0.81
519404--519463	24	2.5	24	78	13	61	50	0	6	43	1.28

Tables:   1   2   3   4   5   6   7   8