genome.fa.s121.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold121
Parameters: 2 7 7 80 10 50 1000
Length:  1076282

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971883--971911	10	2.7	11	89	10	51	24	17	6	51	1.69
974922--974973	20	2.5	21	90	3	79	34	11	11	42	1.77
980016--980093	40	2.0	39	84	2	102	41	12	12	33	1.82
980019--980093	20	3.8	20	74	0	78	41	12	13	33	1.81
980656--980717	32	1.9	32	93	0	106	25	19	27	27	1.99
981759--982402	28	22.6	28	87	4	880	23	16	31	28	1.96
981759--982402	57	11.3	56	89	3	880	23	16	31	28	1.96
983620--983678	13	4.8	12	85	6	82	1	3	8	86	0.75
983620--983678	25	2.4	25	88	5	84	1	3	8	86	0.75
983620--983681	23	2.6	24	85	12	83	3	3	9	83	0.86
997635--997706	20	3.6	20	78	0	81	43	11	12	33	1.78
998096--998126	2	15.5	2	93	0	53	51	0	0	48	1.00
998946--998975	2	15.0	2	100	0	60	50	0	0	50	1.00
999191--999220	3	10.0	3	100	0	60	66	0	0	33	0.92
999680--999710	7	4.4	7	100	0	62	45	0	0	54	0.99
1002302--1002347	18	2.6	18	89	0	65	39	0	8	52	1.33
1002302--1002347	22	2.1	22	95	0	83	39	0	8	52	1.33
1002505--1002539	7	5.0	7	96	0	61	45	0	0	54	0.99
1002592--1002664	37	2.0	37	86	5	103	28	13	23	34	1.93
1003337--1003379	22	1.9	22	85	4	59	53	20	0	25	1.46
1009310--1009459	52	2.9	52	86	5	223	32	16	18	32	1.94
1009499--1009565	33	2.0	33	88	0	98	40	14	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009521--1009545	13	1.9	13	100	0	50	32	16	16	36	1.90
1010381--1010531	55	2.8	55	85	3	191	33	15	25	26	1.95
1010145--1010877	344	2.1	344	95	0	1306	35	14	26	23	1.93
1010828--1011017	43	4.1	44	81	9	229	31	16	25	26	1.96
1010775--1011006	95	2.4	93	86	7	313	32	16	24	26	1.96
1011075--1011348	30	9.0	30	74	12	186	28	14	28	27	1.96
1011102--1011193	35	2.7	34	81	6	107	39	10	28	21	1.87
1011172--1011344	29	5.9	29	80	6	188	25	17	30	27	1.97
1012784--1012819	13	2.8	13	91	8	56	0	0	11	88	0.50
1012784--1012835	14	3.8	13	82	9	68	0	3	11	84	0.74
1026640--1026789	52	2.9	51	88	4	228	31	17	18	33	1.94
1026851--1026875	13	1.9	13	100	0	50	32	16	16	36	1.90
1027459--1027513	6	9.3	6	82	9	69	0	21	0	78	0.76
1027457--1027514	22	2.6	22	86	5	82	0	22	0	77	0.77
1028859--1029031	61	2.8	61	75	10	165	41	9	22	26	1.85
1029177--1029270	31	3.0	31	80	7	100	23	15	26	34	1.95
1029339--1029537	32	6.4	32	69	9	108	26	19	26	27	1.99
1029485--1029591	32	3.4	32	74	7	94	27	16	27	28	1.97
1029577--1030116	28	19.1	28	80	4	467	22	17	29	31	1.96
1029577--1030116	85	6.4	86	80	4	438	22	17	29	31	1.96
1029604--1030109	57	8.9	56	78	4	323	22	17	28	30	1.97
1030137--1030213	29	2.7	29	83	2	93	32	15	22	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030116--1030419	28	10.5	28	73	7	178	25	16	26	31	1.96
1030337--1030433	28	3.4	29	77	5	99	29	17	23	28	1.97
1031563--1031603	10	3.9	11	81	6	50	2	9	4	82	0.89
1035152--1035201	13	3.5	13	78	19	55	34	16	18	32	1.92
1035246--1035270	13	1.9	13	100	0	50	32	16	16	36	1.90
1035279--1035407	52	2.5	52	96	0	240	34	19	18	27	1.95
1037516--1037566	27	2.0	26	85	11	70	25	39	17	17	1.92
1041424--1041457	17	2.0	17	88	0	50	5	26	14	52	1.64
1043013--1043068	28	2.0	29	85	3	78	25	7	14	53	1.66
1043319--1043353	16	2.1	17	89	5	54	11	11	0	77	1.00
1044041--1044084	22	2.0	23	81	4	54	36	2	6	54	1.40
1047653--1047677	11	2.3	11	100	0	50	8	0	0	92	0.40
1048576--1048614	19	2.1	18	85	4	51	71	0	0	28	0.86
1050929--1050960	2	16.0	2	100	0	64	50	0	0	50	1.00
1051239--1051279	21	1.9	21	85	14	57	29	0	0	70	0.87
1051380--1051411	2	16.0	2	93	0	55	53	0	46	0	1.00
1052724--1052755	16	2.0	16	93	0	55	71	0	0	28	0.86
1052857--1052906	21	2.2	23	79	10	59	60	4	2	34	1.27
1053459--1053523	29	2.2	30	86	8	89	46	3	0	50	1.17
1053471--1053531	29	2.1	29	81	6	70	40	4	3	50	1.40
1055388--1055450	13	5.0	13	75	13	51	63	1	1	33	1.13
1055377--1055449	37	2.0	36	84	7	94	58	1	1	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055394--1055443	20	2.7	20	79	17	63	64	0	0	36	0.94
1055490--1055542	17	3.0	17	73	10	52	37	0	1	60	1.08
1055797--1055867	13	5.3	13	74	15	56	61	2	0	35	1.10
1055808--1055850	14	3.2	13	83	9	50	65	4	0	30	1.13
1055800--1055862	28	2.2	30	78	16	71	63	3	0	33	1.10
1056377--1056486	29	3.7	30	80	7	109	45	1	0	52	1.11
1056478--1056506	14	2.0	15	93	6	51	27	3	6	62	1.37
1056628--1056659	16	2.0	16	100	0	64	50	0	0	50	1.00
1056859--1056918	25	2.4	25	78	10	61	55	0	3	41	1.16
1059035--1059175	62	2.3	62	93	0	246	34	12	17	35	1.88
1059404--1059440	7	4.8	8	90	10	51	51	0	0	48	1.00
1060655--1060694	20	2.0	20	85	9	55	72	7	0	20	1.08
1061708--1061767	28	2.1	29	87	9	88	36	0	1	61	1.06
1061708--1061780	28	2.5	28	82	14	78	35	1	2	60	1.20
1061895--1061961	32	2.1	32	82	2	80	44	1	0	53	1.09
1062185--1062216	2	16.0	2	93	0	55	50	3	0	46	1.17
1062243--1062311	17	3.5	20	70	18	56	46	0	1	52	1.09
1062266--1062318	17	3.2	17	86	2	72	41	0	1	56	1.10
1062299--1062376	26	2.9	28	74	16	83	46	2	1	50	1.23
1063604--1063655	16	3.2	16	78	13	52	48	0	0	51	1.00
1063639--1063710	22	3.5	20	74	20	58	56	0	0	43	0.99
1063841--1063952	6	18.5	6	70	21	58	34	0	1	63	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063838--1063893	21	2.5	22	82	5	69	26	0	0	73	0.84
1063856--1063980	27	5.0	25	71	21	86	36	0	2	61	1.09
1063937--1063994	28	2.0	31	86	10	86	37	0	1	60	1.07
1063935--1064001	27	2.5	26	78	19	75	35	0	1	62	1.04
1063935--1064001	28	2.5	25	79	13	80	35	0	1	62	1.04
1064374--1064448	20	3.8	20	78	0	87	34	13	12	40	1.81
1064374--1064451	40	2.0	39	87	2	111	34	12	12	39	1.82
1065362--1065415	22	2.5	22	96	3	101	18	11	9	61	1.55
1071852--1071881	12	2.5	12	94	0	51	90	10	0	0	0.47
1071852--1071883	11	2.9	11	95	0	55	84	15	0	0	0.63
1072908--1073578	27	24.5	27	90	2	1009	23	33	14	28	1.94
1072908--1073578	110	6.1	108	90	1	1009	23	33	14	28	1.94
1072895--1074666	28	62.5	28	85	5	1339	26	32	16	24	1.96
1073581--1074717	145	7.8	143	83	7	1207	27	31	18	22	1.97
1075273--1075347	20	3.8	20	74	0	78	34	14	12	38	1.83

Tables:   1   2   3   4   5   6   7   8

The End!