genome.fa.s121.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold121
Parameters: 2 7 7 80 10 50 1000
Length:  1076282

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517972--519842	628	3.0	621	94	1	3302	40	11	12	36	1.78
524788--524912	52	2.4	52	94	0	214	27	18	18	36	1.94
524788--524932	52	2.8	51	88	4	202	28	17	18	34	1.94
524921--524945	13	1.9	13	100	0	50	36	16	16	32	1.90
525916--527421	49	32.0	49	82	8	1893	31	17	25	25	1.97
525906--527411	92	16.0	93	91	5	1722	31	17	25	25	1.97
525907--527788	184	10.0	185	83	10	1776	32	17	25	25	1.97
527433--527791	52	7.0	52	87	4	505	33	15	25	25	1.95
527433--527788	101	3.5	102	89	4	504	33	15	25	25	1.95
528046--528329	49	5.7	49	84	1	370	31	17	25	26	1.97
528046--528329	98	2.9	98	91	1	451	31	17	25	26	1.97
528334--528398	33	1.9	34	96	3	123	16	18	36	27	1.93
528383--529479	202	5.6	197	89	6	1391	31	13	34	20	1.91
528880--528989	27	3.8	27	81	15	139	21	16	38	23	1.93
528437--529479	263	4.0	259	88	7	1364	31	13	34	20	1.91
529033--529477	62	7.0	61	87	6	525	31	13	33	21	1.92
529262--529446	28	6.2	28	72	14	138	32	12	31	22	1.92
529466--529629	62	2.7	63	85	8	205	28	17	29	25	1.98
529485--529629	31	4.7	31	83	10	181	25	19	29	25	1.98
531991--532034	15	3.0	14	80	9	52	75	0	25	0	0.81
533036--533095	27	2.2	28	80	14	72	41	0	5	53	1.23
535310--535369	24	2.5	24	78	13	61	50	0	6	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533877--535748	629	3.0	620	95	1	3311	40	11	12	36	1.78
536621--536649	6	4.8	6	100	0	58	86	0	0	13	0.58
537305--537351	23	2.0	25	84	12	64	36	19	10	34	1.86
537764--537828	33	2.0	33	85	11	89	32	16	13	36	1.89
537858--537912	19	2.8	20	91	5	94	36	12	18	32	1.88
537898--537924	13	2.1	13	100	0	54	40	14	14	29	1.86
538717--538756	8	5.3	7	88	8	53	70	0	2	27	1.01
539382--539429	23	2.1	23	92	0	78	50	16	22	10	1.76
539917--539971	19	2.9	19	83	2	58	47	29	12	10	1.76
542423--542457	17	2.1	17	88	0	52	31	8	8	51	1.63
545315--545340	13	2.0	13	100	0	52	38	15	15	30	1.88
545297--545361	32	2.0	32	87	6	94	43	15	13	27	1.85
547562--547611	21	2.3	21	80	10	57	56	4	18	22	1.58
549661--549697	13	3.0	13	84	7	51	37	18	13	29	1.90
549798--549934	53	2.6	53	95	1	247	27	17	18	37	1.93
549922--549976	21	2.7	20	80	5	65	30	14	16	38	1.89
550015--550055	21	2.0	21	85	9	57	39	9	12	39	1.76
552899--552932	13	2.6	13	90	0	50	38	17	14	29	1.90
554551--554593	23	2.0	21	81	9	50	13	9	16	60	1.58
555498--555523	13	2.0	13	100	0	52	38	15	15	30	1.88
555480--555544	32	2.0	32	87	6	94	43	15	13	27	1.85
562942--562977	8	4.4	8	86	6	54	86	0	8	5	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564415--564571	44	3.6	43	80	3	172	21	23	14	40	1.90
564698--565592	42	21.4	42	69	11	388	18	27	18	35	1.94
564698--565175	84	5.7	84	83	3	518	18	27	19	35	1.95
564698--565038	167	2.1	165	85	5	456	17	27	19	35	1.94
564675--565175	252	2.0	248	83	3	621	18	27	18	35	1.94
567271--567320	19	2.6	19	87	0	73	44	34	14	8	1.74
572404--572458	22	2.4	23	80	17	62	49	0	3	47	1.19
572540--572636	33	3.0	31	77	8	104	47	0	0	52	1.00
572611--572671	19	3.2	18	65	13	50	54	0	0	45	1.00
572594--572686	39	2.4	39	100	0	186	49	0	0	50	1.00
572574--572658	15	6.0	16	67	25	66	49	0	0	50	1.00
573160--573314	29	5.2	30	79	9	97	41	3	5	50	1.41
573183--573297	14	7.9	15	80	5	112	41	3	5	49	1.42
573183--573282	29	3.4	29	86	4	139	42	2	5	51	1.35
573183--573312	14	8.9	13	78	13	71	41	3	5	50	1.41
573994--574046	18	2.9	18	82	17	58	30	0	0	69	0.88
577171--577213	2	21.5	2	100	0	86	48	0	0	51	1.00
578556--578588	16	2.1	16	88	11	50	57	0	18	24	1.40
579117--579153	17	2.1	18	90	5	58	51	2	2	43	1.30
582959--582999	20	2.0	20	90	0	64	29	9	29	31	1.89
586385--586432	26	2.0	25	84	12	64	33	10	2	54	1.46
588363--588388	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588345--588408	33	2.0	32	90	3	101	39	20	14	26	1.90
594542--594566	13	1.9	13	100	0	50	32	16	16	36	1.90
597037--597090	19	2.7	21	85	5	76	40	12	16	29	1.86
597150--597175	13	2.0	13	100	0	52	38	15	15	30	1.88
597132--597195	33	2.0	32	90	3	101	39	18	14	28	1.90
601026--601061	2	18.0	2	94	0	63	47	0	2	50	1.15
601883--601933	20	2.5	22	84	15	81	27	17	0	54	1.43
608139--608196	24	2.4	25	85	5	75	51	0	0	48	1.00
608139--608210	24	3.0	23	74	11	65	48	1	0	50	1.09
608254--608294	17	2.6	16	84	11	57	46	0	4	48	1.23
608790--608863	15	5.1	14	73	14	60	40	10	6	41	1.66
610561--610586	2	13.0	2	100	0	52	50	0	0	50	1.00
623878--623917	14	3.0	14	80	20	50	75	0	2	22	0.93
627588--627695	52	2.1	51	82	5	128	50	1	0	47	1.11
628216--628323	14	7.5	14	71	4	54	38	6	6	48	1.55
628214--628324	15	7.5	15	70	14	70	38	6	6	48	1.54
628216--628334	44	2.7	44	77	8	127	38	5	8	47	1.58
628365--628395	14	2.2	14	94	0	53	45	16	0	38	1.47
630084--630121	2	19.0	2	100	0	76	50	0	0	50	1.00
630485--630509	13	1.9	13	100	0	50	64	0	12	24	1.27
632529--632578	21	2.5	19	83	6	64	30	2	0	68	1.01
633013--633043	16	1.9	16	93	0	53	29	6	6	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633200--633259	28	2.2	28	82	8	70	50	0	1	48	1.11
633231--633275	24	1.9	23	86	13	65	60	2	0	37	1.09
634218--634265	25	2.0	24	91	4	78	58	6	6	29	1.47
635425--635468	20	2.2	20	87	0	61	31	20	9	38	1.84
635554--635578	13	1.9	13	100	0	50	36	16	16	32	1.90
638261--639165	49	19.5	48	80	11	998	26	23	17	32	1.97
638294--639120	43	18.1	43	80	12	848	26	23	17	32	1.97
638294--638361	22	3.1	22	62	19	52	26	25	17	30	1.97
638257--639165	92	9.9	92	93	1	1464	26	23	17	32	1.97
638393--639261	135	6.2	138	79	11	470	26	24	17	32	1.97
639963--640030	32	2.1	32	94	0	118	33	10	17	38	1.84
639982--640006	13	1.9	13	100	0	50	36	16	16	32	1.90
639961--640025	19	3.7	19	73	23	70	32	10	16	40	1.84
647550--647579	13	2.2	14	94	5	53	63	13	13	10	1.52
649165--649265	42	2.4	42	75	11	107	32	16	32	17	1.93
649209--649840	42	15.1	42	71	11	256	34	18	28	18	1.95
649165--649840	84	8.1	84	85	1	825	34	18	29	18	1.95
655595--655619	13	1.9	13	100	0	50	32	16	16	36	1.90
655607--655659	20	2.6	21	84	3	72	39	15	16	28	1.89
655692--655755	20	3.7	18	74	25	66	40	20	12	26	1.88
655711--655736	13	2.0	13	100	0	52	30	23	15	30	1.95
655692--655755	32	2.0	33	93	3	112	40	20	12	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662032--662106	39	1.9	39	94	0	132	29	25	17	28	1.97
663815--663888	5	15.4	5	68	18	50	41	17	18	21	1.90
663798--663886	28	3.1	28	90	4	126	43	15	19	21	1.87
663934--664015	19	4.2	18	73	17	56	25	2	0	71	0.98
668132--668182	7	7.4	7	82	12	70	80	0	0	19	0.71
668129--668223	11	8.6	11	70	18	56	74	0	1	24	0.88
668272--668380	29	3.9	29	75	7	125	21	20	16	42	1.89
668288--668391	55	1.9	55	91	0	172	21	20	13	45	1.85
671250--671274	13	1.9	13	100	0	50	36	16	16	32	1.90
678819--678859	21	2.0	21	85	0	55	34	7	9	48	1.64

Tables:   1   2   3   4   5   6   7   8