genome.fa.s121.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold121
Parameters: 2 7 7 80 10 50 1000
Length:  1076282

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865110--865139	14	2.1	15	93	6	53	36	0	0	63	0.95
865306--865342	13	2.8	14	84	12	51	51	0	2	45	1.15
865302--865368	29	2.4	29	85	5	93	53	0	1	44	1.09
866233--866276	18	2.4	19	84	7	63	61	0	0	38	0.96
868281--868312	3	10.7	3	100	0	64	68	0	0	31	0.90
868597--868647	2	25.5	2	100	0	102	50	0	0	49	1.00
869325--869422	30	3.3	29	76	7	92	40	4	1	54	1.26
872037--872128	41	2.3	43	80	15	110	39	3	3	54	1.33
872074--872131	6	9.7	6	74	20	50	39	1	0	58	1.08
872037--872131	17	4.9	18	75	20	77	38	3	3	54	1.32
872794--872829	2	18.0	2	100	0	72	0	50	0	50	1.00
872829--872855	2	13.5	2	100	0	54	48	0	0	51	1.00
875537--875561	2	12.5	2	100	0	50	48	0	0	52	1.00
876712--876750	16	2.4	16	100	0	78	38	12	17	30	1.88
877566--877749	34	5.4	34	87	3	255	40	26	7	26	1.82
881815--881877	19	3.3	19	90	0	90	34	19	17	28	1.94
882184--882365	34	5.4	34	87	3	251	40	26	7	25	1.82
883516--883558	2	21.5	2	95	0	77	46	2	0	51	1.13
883848--883876	2	14.5	2	100	0	58	51	0	0	48	1.00
886246--886290	22	2.0	22	82	0	54	71	0	2	26	0.98
887374--887432	21	2.7	22	75	17	68	64	1	3	30	1.20
887386--887437	14	3.4	14	74	23	50	65	1	3	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887455--887546	37	2.4	38	80	14	91	54	1	0	44	1.07
887494--887571	35	2.2	34	80	10	86	53	0	1	44	1.08
888087--888118	17	1.9	16	93	6	55	37	0	0	62	0.95
889069--889132	28	2.3	28	81	5	76	67	1	0	31	1.00
889010--889167	83	1.9	84	86	1	228	58	2	0	38	1.11
892478--892510	14	2.4	14	90	10	50	69	0	0	30	0.88
892925--892966	15	3.0	14	86	6	50	59	0	0	40	0.97
893069--893109	14	2.9	15	82	13	52	60	0	0	39	0.96
893075--893116	21	2.0	21	86	4	59	66	0	0	33	0.92
893159--893213	20	2.8	19	75	8	56	54	0	0	45	0.99
893083--893222	66	2.1	70	79	15	152	57	1	0	40	1.13
899695--899782	23	4.0	21	73	17	72	40	0	1	57	1.06
899699--899886	12	16.8	12	68	17	70	38	0	1	60	1.04
899733--899781	23	2.1	23	92	0	80	42	0	0	57	0.99
899695--899782	44	2.0	43	80	12	99	40	0	1	57	1.06
899697--899820	65	1.9	64	85	4	169	39	0	1	58	1.08
899789--899865	21	3.5	21	75	20	61	37	0	0	62	0.96
899827--899885	3	19.7	3	89	6	93	35	0	0	64	0.94
900890--900914	13	1.9	13	100	0	50	56	8	4	32	1.47
903420--903453	3	11.3	3	100	0	68	64	0	35	0	0.94
903821--903854	10	3.5	10	88	4	52	0	8	0	91	0.43
904064--904133	28	2.4	28	86	9	88	30	0	1	68	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904064--904110	16	2.8	16	90	6	67	29	0	0	70	0.88
904005--904120	21	5.8	19	69	24	71	32	0	1	65	1.03
907038--907094	21	2.8	20	76	7	60	54	1	0	43	1.10
907656--907707	22	2.6	19	77	19	52	57	1	0	40	1.10
908760--908802	20	2.2	18	84	12	50	37	0	2	60	1.10
908766--908804	18	2.0	20	90	9	64	35	0	2	61	1.10
908778--908813	18	1.9	18	88	5	54	41	2	0	55	1.14
917338--917373	17	2.1	17	89	0	54	52	8	0	38	1.32
918867--918891	13	1.9	13	100	0	50	36	16	16	32	1.90
918847--918912	32	2.0	33	91	2	107	34	12	16	36	1.86
918953--918977	13	1.9	13	100	0	50	32	16	16	36	1.90
918953--919063	33	3.4	33	68	12	111	29	18	17	35	1.93
918986--919095	32	3.4	32	67	12	98	30	19	19	30	1.96
918952--919096	65	2.2	65	98	0	281	30	18	17	33	1.95
919018--919042	13	1.9	13	100	0	50	32	16	16	36	1.90
919493--919517	13	1.9	13	100	0	50	36	16	16	32	1.90
919473--919538	32	2.0	33	94	2	116	34	12	16	36	1.86
919580--919604	13	1.9	13	100	0	50	32	16	16	36	1.90
922959--922984	13	2.0	13	100	0	52	38	15	7	38	1.76
922938--923005	33	2.1	33	83	5	84	38	11	11	38	1.79
931629--931681	19	2.7	21	88	8	76	26	15	16	41	1.88
933278--933319	17	2.3	19	84	12	61	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936076--936297	112	2.0	112	90	6	355	50	5	4	39	1.45
936360--936416	21	2.7	21	78	10	62	17	1	15	64	1.37
936364--936408	20	2.2	20	84	4	54	15	2	17	64	1.39
936382--936441	25	2.6	23	73	7	59	18	3	8	70	1.27
936504--936679	54	3.3	55	79	7	175	32	4	2	60	1.30
936611--936697	41	2.2	41	84	10	110	33	2	0	64	1.06
936620--936702	21	4.2	20	73	21	84	33	1	0	65	1.01
936622--936706	31	2.8	31	74	13	95	34	1	0	64	1.01
937452--937498	22	2.1	23	84	4	60	23	6	0	70	1.10
937551--937612	26	2.4	27	75	8	65	51	1	0	46	1.10
937552--937590	20	1.9	21	89	5	62	48	0	0	51	1.00
937834--937858	2	12.5	2	100	0	50	0	48	0	52	1.00
938931--939082	11	13.5	11	70	17	91	59	0	0	40	0.98
938937--939047	24	4.9	22	73	16	84	60	0	0	39	0.97
938930--939082	67	2.4	63	78	14	163	58	0	0	41	0.98
938944--939119	59	2.9	61	74	18	161	59	0	0	40	0.97
939544--939606	31	2.0	32	84	9	85	36	1	0	61	1.05
939564--939606	14	2.8	16	75	17	54	34	2	0	62	1.08
940239--940264	5	5.2	5	100	0	52	57	0	0	42	0.98
940313--940360	22	2.2	22	84	0	60	50	0	2	47	1.12
940340--940375	16	2.2	16	95	0	63	55	0	0	44	0.99
940973--941013	17	2.5	17	88	11	59	63	0	2	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941008--941069	32	1.9	33	86	3	90	59	1	0	38	1.07
942772--942819	21	2.3	21	86	10	64	31	12	12	43	1.80
943734--943774	21	2.0	21	90	0	64	36	24	14	24	1.93
945147--945209	19	3.6	18	70	16	60	39	9	11	39	1.73
945153--945227	34	2.2	34	92	0	123	41	8	9	41	1.66
951929--951955	13	2.1	13	100	0	54	40	14	14	29	1.86
952660--953722	49	21.9	49	78	10	947	32	17	25	24	1.97
952621--953722	101	11.3	101	87	3	947	32	17	25	24	1.97
953224--953671	43	10.0	43	78	12	463	30	19	25	24	1.98
953170--953722	92	6.0	92	89	3	785	31	18	25	24	1.97
953404--953471	21	3.2	21	64	32	54	30	17	26	25	1.97
953224--953721	179	2.7	181	92	3	804	30	19	25	24	1.98
953849--954388	69	7.9	68	86	3	669	36	12	31	18	1.89
954355--954438	29	3.0	28	84	6	116	27	14	35	22	1.93
953849--954388	34	15.8	34	86	4	651	36	12	31	18	1.89
954228--954563	34	10.7	31	76	12	147	31	14	32	21	1.93
954367--954573	30	6.9	30	78	10	172	31	14	30	22	1.94
957987--958063	20	3.8	20	92	0	127	33	15	10	40	1.81
958083--958168	32	2.7	32	90	0	145	38	16	11	33	1.85
958110--958166	13	3.9	13	74	24	51	33	15	14	36	1.88
958896--959880	43	21.1	44	74	14	696	31	18	25	24	1.98
958847--959878	192	5.5	191	85	6	1208	31	18	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958896--959870	143	7.0	141	75	12	700	31	18	25	24	1.98
959564--959870	91	3.4	89	85	5	341	29	17	25	27	1.97
959938--960238	34	9.2	33	77	12	255	37	12	29	20	1.89
959951--960004	27	2.0	27	92	0	90	29	14	33	22	1.94
959971--960288	34	9.7	33	74	12	201	36	12	30	20	1.90
959971--960235	67	4.0	67	78	8	281	37	12	29	20	1.90
960207--960265	28	2.1	28	87	6	84	28	13	33	23	1.93
968738--968763	13	2.0	13	100	0	52	46	7	15	30	1.74
969726--969750	3	8.3	3	100	0	50	36	32	0	32	1.58
971268--971308	20	2.2	19	86	8	57	34	17	7	41	1.77

Tables:   1   2   3   4   5   6   7   8