genome.fa.s126.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold126
Parameters: 2 7 7 80 10 50 1000
Length:  2080828

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  12  of  13  ( 1448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881446--1881550	42	2.4	42	84	7	131	20	26	15	37	1.93
1881479--1881580	42	2.4	41	86	4	132	14	24	13	47	1.81
1881479--1881604	42	3.0	41	82	6	103	17	23	15	43	1.87
1882307--1882401	19	5.6	19	72	27	106	37	12	17	31	1.88
1882326--1882414	13	5.9	13	71	27	61	34	14	19	31	1.92
1882307--1882479	32	5.4	32	82	9	210	35	14	18	31	1.91
1882454--1882479	13	2.0	13	100	0	52	30	15	15	38	1.88
1884842--1884969	52	2.5	52	78	6	152	30	28	12	28	1.93
1884834--1885123	51	5.6	50	68	15	160	30	26	12	30	1.92
1884851--1885197	158	2.2	159	86	5	488	28	27	13	30	1.94
1885106--1885162	28	2.0	29	90	10	91	24	29	14	31	1.94
1885134--1885311	79	2.3	79	80	5	191	26	25	14	33	1.94
1887252--1887322	27	2.5	27	84	9	88	22	25	15	36	1.93
1887267--1887435	79	2.2	78	81	6	198	28	26	13	31	1.94
1887374--1887498	51	2.5	50	81	3	142	28	25	12	32	1.93
1887292--1887565	130	2.1	130	83	2	336	29	24	13	32	1.94
1887423--1887631	79	2.6	79	80	4	251	29	22	13	34	1.92
1887585--1887676	46	2.0	46	85	4	123	29	28	7	34	1.85
1897308--1897359	21	2.5	20	81	9	61	46	11	9	32	1.73
1903463--1903596	67	2.0	67	100	0	268	41	14	19	23	1.89
1904111--1904139	13	2.1	14	93	6	51	17	6	51	24	1.69
1904408--1904480	20	3.7	20	84	0	92	45	8	15	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907524--1907568	23	2.0	23	82	8	56	66	2	2	28	1.15
1911125--1911170	2	23.0	2	95	0	83	47	0	0	52	1.00
1911677--1911713	17	2.1	18	85	14	51	45	5	0	48	1.25
1911886--1911921	2	18.0	2	94	0	63	52	0	0	47	1.00
1915326--1915389	33	2.0	30	82	14	76	35	3	3	57	1.30
1915823--1915852	2	15.0	2	100	0	60	50	0	0	50	1.00
1916093--1916154	16	3.7	18	73	18	62	56	0	1	41	1.09
1920308--1920343	18	2.0	18	94	0	63	30	0	2	66	1.06
1920408--1920454	25	2.0	24	91	8	78	48	0	0	51	1.00
1920412--1920466	25	2.2	25	83	3	67	56	1	0	41	1.10
1920835--1920891	27	2.2	26	79	11	64	61	7	3	28	1.39
1920845--1920899	27	2.0	28	85	3	76	54	7	7	30	1.55
1921573--1921825	127	2.0	125	92	4	420	41	12	15	30	1.84
1922443--1922490	19	2.5	20	76	6	55	50	2	2	45	1.25
1922848--1922897	19	2.5	20	78	12	59	58	0	0	42	0.98
1922913--1922989	20	3.8	19	72	12	73	50	1	2	45	1.23
1923036--1923074	20	2.0	19	90	5	60	33	0	0	66	0.92
1923068--1923115	14	3.4	14	77	11	53	60	0	0	39	0.97
1923065--1923125	29	2.1	31	87	9	92	60	0	0	39	0.97
1924427--1924477	20	2.5	21	96	3	95	33	0	0	66	0.92
1978248--1978280	16	2.1	16	100	0	66	63	6	12	18	1.48
1978990--1979025	16	2.2	16	95	0	63	30	0	16	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1982169--1982208	20	2.0	21	95	5	73	40	15	15	30	1.87
1985208--1985281	34	2.1	35	82	7	89	17	14	12	55	1.69
1985698--1986144	237	1.9	237	82	6	566	28	26	11	33	1.91
1985730--1986223	80	6.2	79	75	8	369	28	27	12	32	1.92
1991375--1991399	13	1.9	13	100	0	50	32	20	16	32	1.94
1991355--1991417	33	1.9	33	86	0	90	33	20	14	31	1.92
1991449--1991501	20	2.7	20	88	2	72	39	18	11	30	1.86
1991490--1991514	13	1.9	13	100	0	50	32	16	16	36	1.90
1991471--1991534	32	2.0	32	87	9	94	39	15	15	29	1.89
1992056--1992097	21	2.0	21	85	0	57	33	21	4	40	1.74
1992327--1992370	23	1.9	23	100	0	88	59	18	4	18	1.55
1993128--1993177	21	2.4	21	83	9	59	46	0	22	32	1.52
1993135--1993177	21	2.0	22	86	4	61	48	0	23	27	1.51
1993286--1993311	13	2.0	13	100	0	52	38	15	15	30	1.88
1994994--1995023	11	2.7	11	100	0	60	0	10	33	56	1.32
1995134--1995164	13	2.4	13	94	0	53	35	12	16	35	1.87
1995114--1995180	33	2.0	32	83	11	82	32	19	11	35	1.88
1995805--1995888	19	4.1	21	69	13	68	27	27	4	40	1.76
2003463--2003529	33	2.0	33	85	5	91	34	14	14	35	1.88
2003558--2003610	19	2.7	20	91	2	81	33	18	16	30	1.94
2006147--2006172	13	2.0	13	100	0	52	30	23	15	30	1.95
2006225--2006318	10	9.1	10	68	19	59	39	8	26	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2006191--2006278	44	2.1	41	87	6	122	38	7	25	28	1.84
2006245--2006300	21	2.6	22	94	5	105	37	10	25	26	1.88
2006342--2006478	53	2.6	53	94	1	238	27	17	17	37	1.92
2006466--2006519	20	2.7	21	82	8	76	29	14	16	38	1.89
2006558--2006598	21	2.0	21	85	9	57	39	9	12	39	1.76
2006997--2007069	20	3.6	20	81	3	101	35	13	19	31	1.91
2006997--2007091	41	2.3	42	96	1	174	40	12	17	29	1.87
2007130--2007155	13	2.0	13	100	0	52	38	15	15	30	1.88
2011219--2011249	15	2.1	15	93	0	53	48	16	22	12	1.80
2013264--2013341	20	3.6	21	73	15	70	25	12	16	44	1.83
2013328--2013366	13	3.0	13	96	0	69	30	17	15	35	1.91
2015172--2015218	17	2.7	17	93	3	76	27	2	38	31	1.69
2015824--2015896	20	3.6	20	81	3	101	35	13	19	31	1.91
2015824--2015918	41	2.3	42	96	1	174	40	12	17	29	1.87
2015957--2015982	13	2.0	13	100	0	52	38	15	15	30	1.88
2020574--2020631	19	3.0	20	82	7	75	36	17	13	32	1.89
2020615--2020652	13	2.9	13	96	0	67	34	15	13	36	1.87
2025700--2025782	25	3.3	25	100	0	166	28	16	15	38	1.90
2028491--2028517	13	2.1	13	100	0	54	40	14	14	29	1.86
2028474--2028536	32	2.0	32	87	6	92	42	14	15	26	1.86
2030148--2030180	10	3.3	10	88	12	50	90	3	6	0	0.52
2030906--2030964	20	2.8	20	82	9	73	38	10	11	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032276--2032500	119	1.9	119	88	1	344	25	28	15	31	1.96
2034879--2035449	144	4.0	139	81	6	536	25	22	14	37	1.92
2034908--2035665	73	10.5	71	72	14	457	24	22	14	38	1.92
2034907--2035665	144	5.3	142	78	9	516	24	22	14	38	1.92
2035048--2035599	218	2.6	211	82	9	602	24	22	14	38	1.92
2035487--2035730	69	3.5	68	75	14	205	23	23	16	36	1.94
2034879--2035665	216	3.7	216	76	11	604	24	21	14	38	1.92
2035408--2035730	142	2.3	141	81	5	382	22	22	16	38	1.93
2036639--2036665	13	2.1	13	100	0	54	40	7	14	37	1.74
2037998--2038088	31	3.0	31	91	3	150	25	32	18	23	1.97
2038084--2038316	34	7.0	34	83	9	243	20	33	12	33	1.90
2038096--2038316	67	3.3	65	83	9	270	19	33	13	33	1.91
2038320--2038490	33	5.2	33	89	6	258	27	35	17	19	1.95
2038318--2038490	67	2.6	66	90	5	269	27	35	17	19	1.94
2038490--2039512	49	20.7	49	83	8	1208	24	26	17	30	1.97
2038485--2038717	48	4.9	44	80	12	198	25	26	17	30	1.97
2038536--2038726	95	2.0	92	89	5	285	25	25	17	31	1.97
2038627--2038765	52	2.6	52	83	4	170	25	25	15	33	1.95
2038798--2039512	97	7.4	97	95	2	1184	24	27	18	30	1.98
2040384--2040408	13	1.9	13	100	0	50	36	16	16	32	1.90
2040364--2040430	33	2.0	33	88	0	98	34	11	13	40	1.81
2040472--2040496	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040505--2040625	52	2.3	52	95	2	217	34	18	19	28	1.95
2045199--2045234	15	2.4	15	85	0	54	55	2	13	27	1.52
2050168--2050382	111	2.0	109	97	1	403	51	16	6	25	1.67
2051810--2053919	42	48.9	42	72	10	1008	38	17	28	15	1.90
2052539--2053919	127	10.8	126	74	8	862	38	17	28	15	1.90
2052957--2053085	60	2.2	60	82	2	161	39	15	26	18	1.90
2052923--2053122	102	2.0	101	86	3	276	38	15	27	19	1.92
2054943--2054986	15	3.0	15	83	3	54	11	0	4	84	0.77
2062391--2062457	28	2.4	28	84	0	80	26	20	28	23	1.99
2062450--2062571	51	2.3	52	80	5	138	33	10	22	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13