genome.fa.s126.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold126
Parameters: 2 7 7 80 10 50 1000
Length:  2080828

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303300--303357	19	3.0	20	85	7	84	34	17	15	32	1.91
303341--303365	13	1.9	13	100	0	50	32	16	16	36	1.90
303322--303387	33	2.0	32	88	8	98	37	15	15	31	1.88
303959--304073	53	2.2	52	89	6	171	33	19	7	40	1.80
303959--304073	52	2.2	53	89	6	173	33	19	7	40	1.80
305441--305483	20	2.0	21	82	8	52	13	27	39	18	1.89
305763--305804	21	2.0	21	85	0	57	50	0	21	28	1.49
312084--312137	20	2.7	20	88	11	76	35	18	14	31	1.91
315733--315787	19	2.8	20	80	5	76	34	10	18	36	1.86
315773--315799	13	2.1	13	100	0	54	40	14	14	29	1.86
316644--316696	20	2.7	20	91	2	81	32	13	18	35	1.90
322879--322919	13	3.2	13	82	0	55	29	12	17	41	1.85
325330--325523	91	2.1	91	98	0	370	31	18	17	31	1.94
325592--325622	13	2.4	13	94	0	53	35	16	12	35	1.87
325576--325642	33	2.0	33	88	5	100	32	13	17	35	1.89
326457--326481	13	1.9	13	100	0	50	32	16	16	36	1.90
326567--326614	20	2.5	20	89	3	71	39	22	12	25	1.89
330157--330204	13	3.4	13	79	20	60	35	14	16	33	1.89
330136--330196	17	3.7	17	75	20	67	36	13	14	36	1.85
330134--330204	30	2.3	31	92	4	117	36	12	15	35	1.86
330249--330274	13	2.0	13	100	0	52	30	15	15	38	1.88
332564--332697	52	2.6	52	82	3	171	29	27	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332710--332943	79	2.9	77	79	8	245	26	28	14	30	1.95
343411--343440	13	2.3	13	100	0	60	36	13	16	33	1.88
343388--343457	33	2.1	33	87	10	99	37	17	12	32	1.87
343526--343551	13	2.0	13	100	0	52	30	15	15	38	1.88
343916--343963	22	2.2	23	85	10	66	37	8	6	47	1.59
343611--344106	249	2.0	249	85	6	675	35	13	12	39	1.82
344106--344620	155	3.3	154	78	5	547	37	20	17	25	1.94
345032--345463	169	2.7	161	80	6	480	38	12	12	35	1.82
347987--348022	18	1.9	19	88	5	56	83	0	8	8	0.82
352519--352572	20	2.6	21	88	11	85	31	14	11	42	1.81
353247--353789	149	3.6	148	81	3	590	26	21	17	34	1.96
353247--353789	298	1.8	298	85	1	775	26	21	17	34	1.96
358008--358188	52	3.5	52	93	0	308	29	18	17	34	1.93
358263--358287	13	1.9	13	100	0	50	32	16	16	36	1.90
359118--359538	43	8.7	52	76	13	286	33	17	24	24	1.96
359226--359549	43	7.1	44	81	11	393	31	17	25	24	1.97
359172--359549	92	4.1	92	94	1	639	32	17	25	24	1.97
359537--359968	32	13.5	32	90	4	660	17	17	36	28	1.92
359970--361266	34	39.8	34	78	10	1408	32	12	35	19	1.89
360065--361357	228	5.7	228	94	1	2212	32	12	34	19	1.90
360065--361357	457	2.9	456	94	1	2237	32	12	34	19	1.90
361046--361237	65	3.1	61	88	5	287	31	12	35	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361211--361325	60	1.9	60	87	1	167	28	13	33	23	1.93
361463--361500	16	2.3	17	86	4	51	26	5	23	44	1.74
369407--369587	52	3.5	52	96	0	326	29	17	17	35	1.93
369596--369620	13	1.9	13	100	0	50	36	16	16	32	1.90
369682--369706	13	1.9	13	100	0	50	32	16	16	36	1.90
369661--369726	32	2.0	33	88	2	98	39	15	12	33	1.84
370030--370091	33	1.9	33	86	3	90	24	14	22	38	1.91
370177--370253	34	2.3	33	88	2	118	29	15	18	36	1.92
370242--370282	20	2.0	20	90	0	64	26	12	21	39	1.89
374261--374468	89	2.4	90	81	5	255	29	25	13	30	1.94
374730--374802	35	2.1	35	86	0	101	20	19	12	47	1.81
374853--375180	44	7.5	43	78	5	302	19	23	17	40	1.91
374849--375092	87	2.8	86	82	6	287	19	23	18	39	1.92
374827--375180	131	2.7	131	89	1	521	19	23	16	40	1.91
376562--376587	11	2.4	11	100	0	52	69	0	7	23	1.14
380342--380772	165	2.6	167	86	4	609	29	10	7	52	1.62
381341--381393	12	4.4	12	81	11	56	83	3	9	3	0.90
381355--381409	24	2.2	25	87	6	76	81	1	12	3	0.89
382286--382552	148	1.8	148	80	6	326	37	11	12	38	1.80
382921--383350	155	2.8	154	79	3	434	23	16	20	39	1.92
386848--387084	112	2.1	113	88	2	352	32	23	14	29	1.94
387011--387064	20	2.6	21	88	2	74	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388989--389166	80	2.3	80	83	5	213	30	16	15	37	1.90
392891--393604	166	4.3	164	78	8	630	48	9	11	30	1.71
392892--393602	330	2.1	331	79	8	752	48	9	11	30	1.72
394604--394775	60	2.9	59	87	5	247	43	15	23	18	1.88
394627--394777	30	5.0	30	69	3	124	41	14	23	20	1.89
395187--395211	13	1.9	13	100	0	50	32	16	8	44	1.76
395167--395230	33	1.9	33	87	6	94	31	15	10	42	1.82
398412--398561	30	5.1	30	69	9	85	42	12	20	24	1.86
398427--398536	57	1.9	58	86	1	159	43	13	17	25	1.85
398673--398798	30	4.1	30	74	10	96	42	11	22	23	1.87
398695--398849	61	2.6	60	80	6	168	42	9	22	25	1.84
399676--399737	1	62.0	1	75	0	52	3	4	4	87	0.76
402634--402670	11	3.5	11	88	3	58	81	10	0	8	0.89
403491--403635	74	2.0	74	84	0	191	32	36	19	11	1.88
403488--403660	74	2.3	73	79	5	186	31	38	19	11	1.87
405258--405447	57	3.3	57	94	2	321	28	25	17	28	1.97
415212--415593	189	2.0	189	94	0	665	30	19	21	28	1.98
417491--418113	43	14.6	43	73	8	398	17	28	18	35	1.94
417496--418079	85	6.9	85	83	3	586	18	28	18	35	1.94
417625--418120	213	2.3	213	82	2	586	17	27	19	35	1.94
417510--418114	128	4.7	128	76	4	515	17	28	18	35	1.94
418610--418682	11	7.6	10	78	15	75	78	8	1	12	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418597--418652	21	2.6	21	91	2	85	82	7	0	10	0.85
418597--418652	11	5.2	11	81	12	71	82	7	0	10	0.85
418592--418682	17	4.8	18	74	20	71	76	7	1	14	1.05
418592--418669	29	2.7	28	77	18	79	79	7	1	11	0.99
425149--425203	20	2.8	20	86	5	67	40	10	14	34	1.81
427106--427139	12	2.8	12	90	0	50	26	8	26	38	1.85
429580--429901	174	1.9	170	82	6	407	41	9	11	37	1.74
430640--430697	10	5.8	10	76	17	50	1	17	0	81	0.78
430636--430695	26	2.3	27	88	8	88	1	16	0	81	0.77
431178--431709	164	3.2	162	84	4	588	47	9	11	31	1.71
433159--433191	17	1.9	17	88	11	50	33	12	6	48	1.65
433941--434003	32	2.0	32	81	12	76	57	0	0	42	0.99
437077--437113	18	2.1	18	94	0	65	35	8	18	37	1.81
441086--441145	17	3.6	17	78	13	61	35	6	1	56	1.35
445038--445082	22	2.0	22	86	0	63	35	15	11	37	1.83
448428--448492	33	2.0	33	84	6	87	35	15	10	38	1.82
448553--448616	33	2.0	32	84	3	83	43	12	14	29	1.81
449196--449254	30	2.0	30	84	12	79	13	22	6	57	1.59
451338--451397	30	2.0	30	100	0	120	23	20	16	40	1.91
451482--451533	21	2.4	21	84	12	70	15	21	1	61	1.43
451705--452536	426	2.0	426	98	0	1594	37	12	15	34	1.85
452524--452549	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452506--452569	32	2.0	32	87	3	92	39	17	15	28	1.90
453007--453073	37	1.9	35	88	11	102	32	11	25	29	1.92
454168--454209	21	2.0	21	85	0	57	42	4	28	23	1.74
454598--454758	84	1.9	84	82	5	200	53	3	18	25	1.59
457967--458022	20	2.8	19	89	5	76	39	14	16	30	1.88
465043--465068	13	2.0	13	100	0	52	30	15	15	38	1.88
467626--467678	21	2.6	21	88	5	74	37	16	15	30	1.90
469639--470274	317	2.0	317	92	1	1060	37	17	13	30	1.90
471741--471825	1	85.0	1	69	0	53	84	11	3	0	0.74
471743--471824	7	11.9	7	81	11	98	84	12	3	0	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13