genome.fa.s127.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  4281254

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  10  of  26  ( 3103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741694--1741719	9	2.9	9	100	0	52	34	0	0	65	0.93
1741984--1742014	14	2.2	14	94	0	53	45	0	0	54	0.99
1742120--1742170	16	3.4	15	84	10	68	49	1	1	47	1.24
1742524--1742564	15	2.9	14	78	7	55	53	0	4	41	1.22
1742555--1742603	25	2.0	25	84	7	66	61	2	4	32	1.26
1742522--1742572	15	3.5	15	71	12	52	58	0	3	37	1.16
1742547--1742610	25	2.5	25	76	19	60	56	3	3	37	1.31
1742576--1742669	33	2.8	33	74	15	88	54	5	1	39	1.30
1742614--1742668	17	3.4	17	77	22	55	58	1	0	40	1.09
1743963--1744347	190	2.0	190	92	1	637	25	12	28	33	1.93
1744508--1744583	13	5.4	14	67	16	50	57	1	0	40	1.07
1744539--1744643	44	2.4	44	80	13	110	60	0	0	38	1.03
1744570--1744650	22	3.5	24	70	23	75	64	0	1	34	1.02
1744570--1744652	23	3.7	23	76	12	91	63	0	1	34	1.02
1744539--1744653	45	2.6	45	78	9	103	60	0	0	37	1.09
1744604--1744652	11	4.3	12	82	12	68	69	0	0	30	0.89
1745552--1745618	26	2.4	29	80	14	70	62	2	0	34	1.10
1745634--1745690	29	2.0	28	82	3	69	3	19	3	73	1.12
1745634--1745690	28	2.0	28	83	10	71	3	19	3	73	1.12
1746004--1746046	19	2.3	18	84	11	52	65	4	2	27	1.25
1748773--1748803	2	15.5	2	93	0	53	51	3	0	45	1.17
1750684--1750723	19	1.9	19	85	14	53	47	15	5	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757166--1757201	17	2.1	17	89	0	54	30	8	19	41	1.81
1763398--1763454	22	2.6	23	81	10	66	31	0	7	61	1.23
1763428--1763464	19	1.9	19	88	0	56	35	0	5	59	1.20
1770063--1770197	69	2.0	69	90	0	216	30	18	10	40	1.84
1770123--1770436	91	3.5	91	81	7	385	37	15	6	41	1.72
1770132--1770436	87	3.4	87	82	5	362	38	14	5	41	1.71
1771885--1771964	33	2.4	32	83	8	90	51	6	0	42	1.27
1779496--1779520	13	1.9	13	100	0	50	32	0	4	64	1.12
1779962--1780011	22	2.3	22	80	16	59	46	0	0	54	1.00
1783441--1783483	3	14.3	3	100	0	86	67	0	0	32	0.91
1784816--1784846	3	10.3	3	100	0	62	32	0	0	67	0.91
1788148--1788187	20	2.0	20	85	9	55	50	0	0	50	1.00
1795735--1795761	2	13.5	2	100	0	54	51	48	0	0	1.00
1795761--1795789	2	14.5	2	100	0	58	51	0	0	48	1.00
1797113--1797193	33	2.5	33	80	11	87	48	0	0	51	1.00
1797357--1797389	2	16.5	2	100	0	66	48	0	0	51	1.00
1801284--1801311	3	9.3	3	100	0	56	35	0	0	64	0.94
1805542--1805578	2	18.5	2	100	0	74	51	0	0	48	1.00
1807953--1808024	29	2.6	28	84	4	83	26	4	22	47	1.69
1808102--1808147	20	2.3	20	88	0	65	10	50	4	34	1.57
1812494--1812558	26	2.4	27	87	5	87	23	7	24	44	1.79
1812496--1812584	28	3.4	26	79	10	83	24	7	23	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814688--1814725	2	18.5	2	94	5	67	47	0	2	50	1.15
1817676--1817725	21	2.4	21	82	0	64	34	2	0	64	1.05
1818068--1818111	23	1.9	23	86	9	63	56	9	0	34	1.31
1821220--1821244	2	12.5	2	100	0	50	48	0	0	52	1.00
1823515--1823548	2	17.0	2	100	0	68	50	0	0	50	1.00
1824314--1824360	21	2.2	21	84	0	58	51	4	10	34	1.56
1824643--1824681	2	19.5	2	100	0	78	51	0	0	48	1.00
1825283--1825340	29	2.1	28	87	12	86	60	0	0	39	0.97
1825299--1825349	13	3.4	16	74	17	56	64	0	1	33	1.05
1825283--1825341	13	4.6	13	75	10	59	61	0	0	38	0.96
1828135--1828190	28	2.0	28	82	6	69	67	1	3	26	1.16
1828436--1828468	17	1.9	17	93	0	57	12	0	9	78	0.95
1833072--1833141	15	4.7	16	74	22	64	62	1	0	35	1.04
1833080--1833138	8	6.9	8	81	14	57	62	1	0	35	1.05
1833952--1834043	17	5.6	16	73	18	57	39	0	0	60	0.97
1833965--1834029	23	2.6	25	76	11	71	41	0	0	58	0.98
1833965--1834043	8	9.8	8	72	13	63	40	0	0	59	0.97
1833959--1834047	24	3.5	25	78	10	92	39	0	0	60	0.97
1834387--1834428	20	2.0	22	86	9	61	42	0	0	57	0.99
1834417--1834462	15	3.1	15	79	17	51	36	4	0	58	1.18
1835395--1835460	23	2.8	24	76	2	71	40	0	0	59	0.98
1835446--1835471	7	3.7	7	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835875--1835917	14	2.9	15	83	13	54	37	0	0	62	0.95
1835870--1835928	16	3.6	16	80	17	59	37	0	0	62	0.95
1835870--1835943	18	4.4	17	71	20	57	39	0	0	60	0.97
1836302--1836356	21	2.7	20	80	8	56	52	1	5	40	1.35
1836724--1836764	21	2.0	21	90	9	66	58	0	0	41	0.98
1837609--1837726	8	14.0	8	70	28	61	61	0	1	37	1.07
1837606--1837726	17	6.9	16	71	24	77	61	0	1	37	1.06
1837805--1837842	18	2.0	20	85	10	53	50	0	0	50	1.00
1837781--1837855	24	3.0	26	76	9	75	49	0	0	50	1.00
1837827--1837866	21	2.0	20	90	5	62	42	0	0	57	0.98
1837959--1837998	20	2.0	21	90	5	64	52	0	0	47	1.00
1837947--1838002	25	2.2	26	87	9	80	50	0	0	50	1.00
1839424--1839462	14	2.8	14	84	0	51	51	0	0	48	1.00
1839899--1839936	18	2.1	18	85	14	51	60	5	0	34	1.19
1840953--1840999	11	4.1	12	83	5	62	68	0	2	29	1.02
1840953--1840999	23	2.0	23	88	8	69	68	0	2	29	1.02
1841350--1841384	3	11.7	3	100	0	70	68	0	0	31	0.90
1844524--1844583	26	2.3	27	77	16	63	58	3	0	38	1.15
1849533--1849574	11	3.9	11	75	6	50	47	0	2	50	1.14
1849532--1849579	21	2.3	20	86	6	69	52	0	2	45	1.12
1849873--1849954	38	2.2	38	84	8	105	54	0	4	40	1.22
1851157--1851184	8	3.5	8	100	0	56	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1851353--1851397	18	2.5	19	78	10	58	62	0	6	31	1.21
1857446--1857539	46	2.0	48	88	10	142	39	0	0	60	0.97
1857461--1857597	38	3.6	39	73	17	117	37	2	0	59	1.15
1858068--1858120	25	2.2	24	86	10	72	49	0	1	49	1.12
1858416--1858456	22	1.9	22	95	5	75	58	0	0	41	0.98
1858429--1858535	42	2.6	39	81	12	110	46	1	0	50	1.18
1858669--1858751	27	3.2	27	80	11	77	55	2	1	40	1.21
1860872--1860914	2	21.5	2	81	9	52	46	2	4	46	1.36
1864285--1864313	2	14.5	2	100	0	58	51	0	0	48	1.00
1864725--1864771	4	11.8	4	90	0	67	44	0	6	48	1.28
1865213--1865252	2	20.0	2	94	0	71	47	0	2	50	1.14
1865423--1865448	2	13.0	2	100	0	52	50	0	0	50	1.00
1865985--1866067	41	2.0	42	95	2	150	62	8	0	28	1.24
1866299--1866323	2	12.5	2	100	0	50	52	0	0	48	1.00
1866859--1866888	15	2.0	15	100	0	60	40	20	0	40	1.52
1867246--1867368	62	2.0	62	90	0	192	16	15	9	58	1.62
1867960--1867991	2	16.0	2	100	0	64	50	0	0	50	1.00
1869654--1869703	24	2.1	24	81	7	57	42	6	2	50	1.38
1871245--1871289	17	2.7	18	81	18	53	37	0	0	62	0.96
1871235--1871293	30	2.0	29	83	3	73	37	1	0	61	1.07
1873780--1873810	2	15.5	2	100	0	62	51	0	0	48	1.00
1874594--1874639	2	23.5	2	78	12	51	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1874599--1874646	22	2.2	21	88	3	69	43	0	2	54	1.12
1874630--1874671	20	2.0	22	86	9	61	45	0	0	54	0.99
1874624--1874683	27	2.2	28	82	8	70	41	0	0	58	0.98
1876298--1876343	21	2.2	21	92	0	74	39	0	0	60	0.97
1877396--1877443	20	2.5	20	86	6	64	56	0	0	43	0.99
1877396--1877472	16	4.5	17	72	22	56	51	0	0	48	1.00
1877405--1877472	17	4.1	16	75	17	59	52	0	0	47	1.00
1877433--1877514	27	3.0	27	75	13	71	39	0	0	60	0.96
1877433--1877505	16	4.2	17	69	22	53	42	0	0	57	0.98
1877595--1877638	3	14.7	3	90	0	70	31	2	2	63	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26