genome.fa.s127.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  4281254

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4077974--4078090	30	4.0	29	69	10	69	52	2	10	34	1.49
4078591--4078637	17	2.9	17	87	6	62	23	2	4	70	1.16
4079605--4079683	28	2.6	30	78	9	81	55	0	1	43	1.07
4080531--4080583	27	2.0	27	84	0	70	24	3	5	66	1.31
4082112--4082153	15	2.7	16	77	7	50	64	0	30	4	1.14
4083593--4083620	3	9.3	3	100	0	56	32	0	0	67	0.91
4085080--4085134	28	2.0	28	100	0	110	29	1	29	40	1.67
4085470--4085529	14	3.9	14	78	12	57	83	3	10	3	0.88
4085467--4085530	23	2.7	23	79	15	60	82	3	10	3	0.89
4085468--4085531	25	2.6	24	80	7	65	84	3	9	3	0.84
4086482--4086522	16	2.5	17	92	4	66	63	7	2	26	1.33
4094747--4094793	19	2.5	18	86	10	67	57	2	0	40	1.11
4095582--4095606	2	12.5	2	100	0	50	52	0	0	48	1.00
4095606--4095634	2	14.5	2	100	0	58	51	0	48	0	1.00
4097414--4097447	18	1.9	18	88	5	52	61	0	2	35	1.11
4097437--4097479	22	2.0	22	95	0	77	60	0	0	39	0.97
4097431--4097489	22	2.6	22	78	5	73	57	0	0	42	0.98
4110422--4110463	17	2.5	17	80	7	50	38	14	23	23	1.92
4112363--4112398	2	18.0	2	100	0	72	50	0	0	50	1.00
4125324--4125395	28	2.6	28	95	0	126	43	16	15	25	1.87
4125324--4125370	16	3.2	16	71	22	57	40	17	19	23	1.91
4128024--4128132	54	2.0	54	91	3	175	58	9	1	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4128361--4128391	16	1.9	16	93	0	53	35	16	9	38	1.81
4139676--4139728	23	2.4	23	84	9	67	35	0	0	64	0.94
4139677--4139735	15	4.1	15	71	8	50	38	0	0	61	0.96
4139680--4139783	28	3.8	28	72	16	76	42	0	0	57	0.98
4139694--4139744	19	2.7	19	85	11	61	41	0	0	58	0.98
4139697--4139765	24	3.2	23	80	13	67	39	0	0	60	0.97
4139820--4139891	31	2.3	30	81	6	81	61	0	0	38	0.96
4140053--4140138	24	3.6	24	80	10	106	41	11	1	45	1.48
4140047--4140142	47	2.0	47	95	0	174	40	11	1	46	1.47
4140077--4140147	24	3.0	23	69	16	65	38	12	0	49	1.41
4140232--4140274	22	2.0	22	85	0	59	53	4	0	41	1.21
4140365--4140418	2	27.0	2	100	0	108	50	0	0	50	1.00
4141702--4141797	47	2.0	47	95	0	174	41	18	16	22	1.90
4142837--4142880	23	1.9	23	95	0	79	50	6	6	36	1.56
4143217--4143241	12	2.1	12	100	0	50	52	8	8	32	1.60
4145017--4145069	17	3.0	17	83	5	61	47	0	3	49	1.19
4149423--4149458	16	2.2	16	90	0	54	19	2	13	63	1.41
4150222--4150290	26	2.6	27	76	21	83	46	0	0	53	1.00
4151507--4151570	31	2.1	31	100	0	128	28	18	18	34	1.95
4158761--4158785	13	1.9	13	100	0	50	16	0	4	80	0.87
4161109--4161152	22	2.0	23	86	4	63	29	9	13	47	1.74
4162052--4162106	17	3.1	17	82	12	65	50	1	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4162602--4162635	18	1.9	17	88	5	50	44	0	2	52	1.16
4163194--4163241	25	1.9	25	86	0	69	16	6	0	77	0.97
4168126--4168218	36	2.5	37	82	5	100	38	7	8	45	1.63
4168161--4168220	19	3.3	18	74	21	54	36	6	6	50	1.55
4168126--4168220	37	2.6	36	83	5	102	37	7	8	46	1.62
4168169--4168220	19	2.8	18	77	5	59	38	7	5	48	1.56
4171046--4171118	37	2.0	37	94	0	128	41	10	8	39	1.70
4171040--4171117	18	4.3	18	81	3	102	42	12	7	37	1.72
4174268--4174399	66	2.0	66	93	0	228	33	13	15	37	1.86
4181292--4181346	24	2.3	25	81	9	62	52	1	0	45	1.11
4182055--4182125	22	3.3	21	86	5	97	33	12	0	53	1.39
4183288--4183316	3	9.7	3	100	0	58	31	0	0	68	0.89
4185023--4185070	21	2.1	23	85	11	64	62	0	0	37	0.95
4187144--4187192	2	24.5	2	100	0	98	48	0	0	51	1.00
4192209--4192250	22	1.9	22	85	0	57	59	2	30	7	1.37
4192670--4192709	21	2.0	20	85	5	53	30	0	7	62	1.23
4192959--4192990	4	8.2	4	93	6	57	78	0	0	21	0.76
4195431--4195507	6	13.3	6	81	12	90	50	10	0	38	1.37
4195427--4195507	16	5.1	16	78	18	98	50	9	0	39	1.36
4212417--4212520	51	2.0	51	90	0	163	30	10	29	28	1.90
4217713--4217765	22	2.4	23	81	6	65	58	0	0	41	0.98
4218335--4218377	19	2.3	19	84	4	52	23	2	4	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4220986--4221026	21	1.9	21	85	5	55	17	17	4	60	1.52
4222015--4222188	87	2.0	87	98	0	339	28	16	12	43	1.83
4230504--4230543	19	2.0	20	95	4	73	40	0	0	60	0.97
4231833--4231906	29	2.5	28	79	12	78	52	2	0	44	1.15
4232165--4232229	19	3.3	19	74	10	60	46	3	1	49	1.27
4232221--4232285	34	1.9	34	84	6	87	53	0	1	44	1.09
4232902--4232956	23	2.4	23	84	6	67	43	1	1	52	1.22
4233117--4233213	38	2.6	38	85	11	121	54	1	1	43	1.14
4236404--4236435	14	2.3	15	89	10	50	15	6	0	78	0.95
4242502--4242560	20	2.9	20	82	10	75	52	0	0	47	1.00
4242970--4243019	18	2.8	17	84	9	64	50	0	0	50	1.00
4246239--4248731	831	3.0	830	99	0	4943	27	15	18	37	1.92
4254151--4254184	16	2.1	16	100	0	68	44	0	0	55	0.99
4255285--4255386	50	2.0	50	92	0	168	32	24	19	23	1.98
4258921--4258971	7	7.1	7	78	10	50	43	0	3	52	1.19
4260705--4260754	23	2.3	23	80	16	61	38	2	2	58	1.21
4261010--4261047	16	2.5	15	86	4	58	42	0	0	57	0.98
4261684--4261729	24	1.9	24	86	0	65	41	2	2	54	1.25
4261813--4261881	2	37.0	2	73	13	58	42	0	2	55	1.15
4262314--4262379	33	2.0	33	81	0	78	42	12	9	36	1.74
4263025--4263332	150	2.1	150	96	1	564	38	5	6	49	1.53
4264420--4264449	15	1.9	16	93	6	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4265834--4265881	14	3.4	14	82	5	62	79	0	20	0	0.74
4265834--4265883	20	2.4	20	80	12	57	76	0	24	0	0.80
4265906--4265939	17	1.9	18	94	5	61	17	0	5	76	0.98
4265959--4266017	10	5.5	11	72	11	50	37	3	0	59	1.14
4265945--4266012	35	2.0	33	83	11	84	39	1	1	57	1.17
4266279--4266313	11	3.4	11	88	11	56	31	0	0	68	0.90
4268821--4268865	20	2.4	18	81	7	54	46	0	6	46	1.29
4268905--4269013	56	1.9	56	82	10	134	39	1	0	58	1.09
4268926--4269035	17	5.9	18	70	22	75	35	1	0	62	1.06
4269617--4269669	20	2.8	19	83	10	65	30	0	7	62	1.23
4270310--4270355	3	15.3	3	90	0	74	0	34	2	63	1.07
4274109--4274142	18	2.0	17	88	11	52	14	11	8	64	1.49
4276610--4276682	36	2.0	36	81	0	83	34	27	15	23	1.94
4280761--4280845	39	2.2	39	100	0	170	25	9	11	52	1.67
4280842--4280886	22	2.0	22	95	0	81	22	28	0	48	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!