genome.fa.s127.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  4281254

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  18  of  26  ( 3103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2876086--2876131	19	2.4	19	77	0	56	32	0	0	67	0.91
2876124--2876168	23	1.9	23	86	4	63	44	0	0	55	0.99
2876539--2876586	17	2.8	18	78	12	57	52	0	0	47	1.00
2876734--2876815	44	1.9	44	85	5	114	40	1	0	58	1.06
2876778--2876821	20	2.1	22	87	8	65	40	0	0	59	0.98
2876983--2877016	18	1.9	18	88	5	52	61	14	0	23	1.33
2884951--2884988	19	2.0	19	90	10	60	39	0	0	60	0.97
2885657--2885717	27	2.2	28	82	8	81	42	0	4	52	1.23
2885661--2885717	26	2.2	26	84	6	71	43	0	3	52	1.18
2887694--2887725	2	15.5	2	93	6	55	50	0	3	46	1.17
2888012--2888040	2	14.5	2	100	0	58	51	0	0	48	1.00
2892056--2892105	20	2.5	20	86	0	64	24	8	0	68	1.16
2895062--2895113	27	1.9	27	84	7	70	65	1	0	32	1.04
2895056--2895096	15	2.7	15	79	20	50	63	0	0	36	0.95
2895394--2895434	21	1.9	22	90	5	66	58	4	0	36	1.20
2897101--2897140	20	2.0	20	85	9	55	62	2	0	35	1.09
2897156--2897210	21	2.8	19	78	18	60	60	0	0	40	0.97
2897158--2897226	28	2.5	26	84	13	86	62	0	0	37	0.96
2897168--2897215	13	3.5	13	77	8	51	64	0	0	35	0.94
2897174--2897225	16	3.5	15	77	17	56	63	0	0	36	0.95
2897265--2897303	21	1.9	20	84	5	51	25	2	2	69	1.14
2900485--2900536	24	2.2	25	86	6	72	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2900485--2900543	32	1.9	30	86	6	82	40	0	0	59	0.97
2901520--2901553	2	17.0	2	100	0	68	0	50	0	50	1.00
2903404--2903444	21	2.0	20	85	4	55	24	9	0	65	1.22
2903610--2903660	21	2.5	20	78	12	59	37	9	7	45	1.67
2903825--2903860	14	2.5	14	95	4	63	66	0	0	33	0.92
2905426--2905505	27	3.0	26	69	20	65	56	0	0	43	0.99
2907804--2907862	29	2.0	29	93	0	100	49	22	8	20	1.75
2909843--2909892	18	2.7	19	84	6	75	40	12	20	28	1.87
2909993--2910075	22	3.6	22	78	9	85	36	1	19	43	1.59
2910011--2910058	25	1.9	25	91	0	78	41	0	16	41	1.48
2912779--2912883	34	3.0	34	82	8	129	27	0	30	40	1.63
2914313--2914462	29	5.2	28	70	18	89	44	2	0	53	1.12
2914330--2914375	14	3.0	14	77	22	56	43	0	0	56	0.99
2914302--2914367	17	3.6	18	74	20	57	40	0	0	59	0.98
2914408--2914457	14	3.5	14	78	5	64	46	0	0	54	1.00
2914850--2914892	18	2.6	16	79	13	50	44	0	2	53	1.13
2914855--2914890	18	2.0	18	88	0	54	47	0	2	50	1.15
2915134--2915173	15	2.7	15	80	0	53	72	10	0	17	1.11
2916363--2916417	16	3.4	16	89	0	83	9	14	29	47	1.75
2916351--2916417	32	2.1	32	88	0	98	7	16	29	46	1.74
2916729--2916760	17	1.9	16	93	6	55	37	0	12	50	1.41
2917803--2917856	24	2.2	25	80	12	67	61	14	1	22	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2917980--2918014	18	1.9	18	100	0	70	51	0	0	48	1.00
2918447--2918532	16	4.9	16	70	18	57	58	0	3	38	1.15
2918443--2918540	28	3.5	27	73	14	83	57	0	3	39	1.14
2922537--2922596	19	3.0	20	81	13	79	55	0	0	45	0.99
2923541--2923576	18	2.0	18	94	0	63	47	0	0	52	1.00
2925303--2925347	2	22.5	2	100	0	90	48	0	0	51	1.00
2927003--2927034	16	2.0	16	93	0	55	37	0	28	34	1.57
2931838--2931867	2	15.0	2	92	0	51	50	3	0	46	1.18
2933631--2933674	3	14.7	3	95	0	79	63	0	2	34	1.07
2934017--2934054	20	2.1	19	85	14	53	47	0	0	52	1.00
2936851--2936885	16	2.3	15	95	5	61	37	0	0	62	0.95
2937218--2937264	15	3.0	16	87	6	69	57	0	0	42	0.98
2937580--2937620	21	2.0	21	85	0	55	60	0	14	24	1.34
2937643--2937692	16	3.1	16	75	11	57	50	0	0	50	1.00
2937847--2937882	2	18.0	2	100	0	72	0	50	0	50	1.00
2939124--2939160	2	18.5	2	100	0	74	51	0	0	48	1.00
2941143--2941216	3	24.3	3	84	13	98	32	0	0	67	0.91
2941405--2941470	25	2.6	25	77	20	66	53	0	9	37	1.33
2941446--2941523	40	1.9	42	89	5	124	48	1	5	44	1.32
2943360--2943456	47	2.0	48	90	2	151	24	21	18	35	1.96
2947358--2947399	17	2.6	16	81	7	57	71	7	21	0	1.09
2947637--2948180	273	2.0	272	90	2	869	30	20	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2949620--2949661	16	2.6	16	81	7	50	59	7	0	33	1.25
2949973--2950007	17	2.1	17	89	5	54	57	0	0	42	0.99
2950219--2950247	4	7.5	4	92	7	51	24	0	0	75	0.80
2950219--2950247	15	1.9	15	100	0	58	24	0	0	75	0.80
2950926--2951044	44	2.7	44	83	5	150	37	2	9	50	1.48
2952914--2952949	2	18.0	2	100	0	72	50	0	0	50	1.00
2952972--2953014	22	1.9	23	85	4	61	39	2	2	55	1.25
2954491--2954523	16	2.0	17	88	5	50	48	0	0	51	1.00
2954700--2954734	2	17.5	2	100	0	70	51	0	0	48	1.00
2956365--2956406	19	2.2	19	83	8	50	54	0	0	45	0.99
2956700--2956768	25	3.0	25	76	17	69	43	0	0	56	0.99
2956703--2956766	24	2.8	24	79	11	64	43	0	0	56	0.99
2956722--2956766	21	2.1	22	87	4	65	42	0	0	57	0.98
2957396--2957439	15	2.9	15	80	6	52	34	0	2	63	1.07
2959130--2959217	45	1.9	46	86	6	126	45	20	6	27	1.76
2963462--2963493	14	2.4	13	90	10	55	21	3	0	75	0.95
2964334--2964374	3	13.7	3	100	0	82	34	0	0	65	0.93
2964662--2964686	3	8.3	3	100	0	50	64	0	0	36	0.94
2966421--2966462	21	2.0	22	85	4	59	64	0	0	35	0.94
2974538--2974595	20	3.1	20	73	19	70	34	8	3	53	1.49
2974867--2974897	12	2.5	13	94	5	55	29	0	0	70	0.87
2975108--2975161	26	2.2	24	87	9	74	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2978432--2978516	31	2.8	28	78	15	89	68	0	3	28	1.06
2978595--2978641	18	2.7	17	72	18	51	68	2	0	29	1.02
2978671--2978728	16	3.5	16	76	4	53	67	0	31	1	1.01
2979101--2979177	35	2.2	34	80	11	84	24	2	2	70	1.13
2979203--2979252	17	2.9	17	85	11	66	22	0	10	68	1.19
2979192--2979259	18	3.8	17	77	13	57	26	0	7	66	1.18
2979098--2979259	19	9.3	17	64	28	58	27	1	4	66	1.18
2979506--2979537	16	2.0	16	100	0	64	43	12	25	18	1.85
2979808--2979897	45	1.9	47	84	10	123	38	1	0	60	1.04
2979964--2980041	35	2.2	36	83	4	95	30	0	0	69	0.89
2979976--2980026	15	3.5	15	76	12	52	27	0	0	72	0.85
2980586--2980650	32	2.0	33	88	8	98	52	0	0	47	1.00
2980586--2980632	17	2.9	16	73	20	53	48	0	0	51	1.00
2980656--2980704	11	4.8	10	78	11	55	55	0	2	42	1.11
2980669--2980718	21	2.5	21	87	6	68	54	0	2	44	1.11
2981553--2981632	25	3.2	25	74	10	67	60	2	1	36	1.18
2982566--2982592	13	2.1	13	100	0	54	66	0	0	33	0.92
2984334--2984400	31	2.3	29	87	7	91	55	0	0	44	0.99
2994099--2994189	24	3.7	24	76	15	80	71	3	2	23	1.12
2997353--2997390	3	12.7	3	100	0	76	34	0	0	65	0.93
2997725--2997785	28	2.1	30	87	6	90	29	3	3	63	1.26
2997744--2997785	22	1.9	22	90	0	66	30	2	2	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2997725--2997785	6	10.5	6	75	7	63	29	3	3	63	1.26
2998154--2998235	6	13.7	6	77	16	73	50	0	0	50	1.00
2998174--2998235	5	12.0	5	80	10	54	50	0	0	50	1.00
2998152--2998249	22	4.2	24	70	17	71	52	0	1	46	1.07
2998152--2998232	11	7.9	11	76	19	77	49	0	0	50	1.00
2998273--2998308	16	2.2	17	90	5	56	50	8	5	36	1.56
2998273--2998339	16	4.1	16	70	1	53	50	10	4	34	1.57
2998278--2998339	32	1.9	32	83	0	79	53	9	3	33	1.50
3002012--3002194	92	2.0	91	95	1	330	44	11	13	30	1.78
3003863--3003918	23	2.5	21	75	13	58	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26