genome.fa.s128.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold128
Parameters: 2 7 7 80 10 50 1000
Length:  1835488

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1217 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223994--224107	20	5.7	20	92	0	174	34	9	17	38	1.83
224014--224091	12	7.5	12	69	30	72	33	11	19	35	1.88
224075--224208	51	2.6	51	85	3	173	26	14	13	44	1.83
235729--235778	21	2.4	21	83	9	59	48	0	20	32	1.50
235736--235778	21	2.0	22	86	4	61	51	0	20	27	1.48
235915--236245	80	4.2	78	80	7	312	33	11	27	28	1.91
236037--236263	77	2.9	78	85	5	287	32	12	28	26	1.93
241174--241230	26	2.1	27	87	3	80	45	10	15	28	1.79
250600--250650	20	2.5	20	87	6	66	29	19	11	39	1.87
267576--267729	55	2.8	56	86	3	195	27	31	12	28	1.93
267625--268225	28	20.8	28	81	7	549	30	30	16	22	1.96
268317--268533	48	4.5	48	88	0	326	17	27	18	35	1.94
268853--268888	10	3.5	10	92	3	54	88	5	5	0	0.61
274275--274330	20	2.8	19	89	5	76	37	16	17	28	1.91
274381--274432	19	2.7	20	90	6	88	44	15	11	28	1.81
278472--278506	15	2.2	16	90	5	54	51	14	20	14	1.76
282650--282705	20	2.8	19	89	5	76	37	16	17	28	1.91
282756--282807	19	2.7	20	87	6	79	44	13	11	30	1.79
287468--287581	51	2.3	51	87	3	169	28	14	12	44	1.81
292757--292931	72	2.4	72	98	0	332	36	15	14	33	1.88
293005--293053	19	2.5	20	77	9	57	38	16	10	34	1.82
295733--295783	24	2.1	24	88	3	75	35	9	11	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309342--309380	20	2.0	20	94	0	69	43	10	17	28	1.82
309777--309820	23	1.9	23	86	9	63	29	6	22	40	1.80
315242--315292	19	2.7	19	96	0	93	39	17	11	31	1.86
315909--316359	31	14.4	31	74	2	245	29	31	24	14	1.94
315909--316359	62	7.2	62	74	5	314	29	31	24	14	1.94
315900--316331	93	4.6	93	74	8	372	29	31	24	14	1.94
318198--318277	20	3.2	24	64	32	60	21	15	13	50	1.78
318123--318311	51	3.7	51	93	2	301	25	16	12	46	1.81
323735--323793	32	1.9	30	83	13	75	59	10	10	20	1.58
326659--326683	13	1.9	13	100	0	50	32	16	20	32	1.94
328763--328793	15	2.1	15	93	0	53	12	22	16	48	1.80
330594--330638	21	2.1	21	84	8	56	22	20	4	53	1.63
332857--332882	13	2.0	13	100	0	52	30	15	15	38	1.88
334624--334780	20	7.8	20	72	23	107	26	16	15	42	1.88
334692--334756	33	2.0	33	96	0	121	29	15	13	41	1.86
337063--337226	51	3.2	51	81	5	163	29	25	12	32	1.93
337164--337569	79	5.2	79	80	6	443	27	25	14	32	1.95
337164--337552	154	2.5	154	80	7	450	27	25	13	33	1.94
339486--339560	27	2.7	27	85	2	105	29	26	18	25	1.98
339734--339921	33	5.8	33	79	5	168	32	29	14	22	1.94
339865--339926	32	1.9	32	83	0	79	35	30	11	22	1.89
340009--340144	52	2.6	53	80	4	134	22	20	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349519--349593	20	3.8	20	85	0	114	33	14	12	40	1.83
363836--363891	18	3.2	17	77	7	58	85	7	1	5	0.79
365101--365847	28	26.1	28	81	4	792	28	29	18	24	1.98
365101--365847	85	8.7	85	83	3	843	28	29	18	24	1.98
365101--365939	232	3.6	232	84	4	1029	28	28	18	24	1.98
366780--366837	20	2.8	20	81	2	71	31	17	13	37	1.89
370317--370623	168	1.8	167	81	6	388	17	24	15	42	1.88
370656--370850	85	2.3	84	76	4	205	13	26	17	42	1.86
370116--370856	42	17.8	42	71	10	314	16	25	16	41	1.89
372542--372595	27	2.0	27	100	0	108	29	7	11	51	1.64
374507--374541	17	2.1	17	88	0	52	40	8	31	20	1.82
375258--376466	42	29.3	42	75	11	563	41	17	24	16	1.89
375285--376466	84	14.3	84	73	9	664	41	17	24	16	1.89
375258--376764	125	12.3	125	73	10	894	41	17	24	16	1.89
375356--376762	235	5.7	252	74	11	766	42	17	24	16	1.88
376031--376467	167	2.6	168	79	5	449	42	17	23	16	1.88
375412--376741	527	2.5	527	79	7	1385	42	17	24	16	1.88
376318--376617	151	2.0	151	82	6	367	40	18	26	14	1.90
376468--376766	42	7.2	42	77	3	255	42	18	24	14	1.87
376870--376983	47	2.4	46	85	4	156	41	20	18	20	1.91
377287--377337	20	2.6	19	72	22	52	37	17	7	37	1.79
378235--378673	47	9.3	47	75	10	328	41	15	18	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378235--378673	142	3.1	141	81	4	501	41	15	18	23	1.89
378235--378673	95	4.7	94	77	7	385	41	15	18	23	1.89
382029--382104	20	3.7	20	82	6	89	35	13	17	34	1.88
382027--382083	22	2.7	21	89	5	89	36	14	19	29	1.91
385617--385651	16	2.2	16	100	0	70	28	28	17	25	1.97
388230--388361	57	2.5	52	79	12	144	60	15	15	8	1.57
388747--388817	25	2.8	25	85	6	81	12	21	12	53	1.71
388778--388836	23	2.5	24	80	5	66	15	20	11	52	1.73
390206--390240	17	1.9	19	88	11	56	2	11	0	85	0.69
402231--402255	13	1.9	13	100	0	50	32	16	16	36	1.90
402211--402273	33	1.9	33	87	12	94	30	17	15	36	1.91
402303--402360	19	3.1	18	85	11	80	32	13	17	36	1.89
402344--402370	13	2.1	13	100	0	54	40	14	14	29	1.86
402325--402389	32	2.0	32	90	3	103	40	15	15	29	1.88
405006--405032	14	1.9	14	100	0	54	40	0	0	59	0.98
407756--407813	20	2.8	21	84	5	73	39	13	8	37	1.76
407760--407834	19	3.7	19	76	11	60	36	13	8	42	1.73
409658--409698	13	3.2	13	78	0	55	34	14	19	31	1.92
409693--409723	14	2.2	14	94	0	53	41	9	22	25	1.84
409792--409854	32	1.9	32	87	3	90	38	14	17	30	1.89
410853--410878	7	3.7	7	100	0	52	84	0	0	15	0.62
410985--411029	20	2.2	21	88	11	67	51	20	13	15	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412983--413027	21	2.1	21	83	0	54	26	13	4	55	1.57
413039--413093	21	2.6	21	85	0	65	18	20	1	60	1.46
413054--413096	21	2.0	21	90	0	68	20	13	2	62	1.42
415159--415198	13	3.1	13	88	0	62	37	12	20	30	1.89
415193--415238	24	1.9	24	95	0	83	43	8	23	23	1.82
420185--420216	17	1.9	16	93	6	55	31	18	12	37	1.88
423645--423697	21	2.4	22	87	6	72	69	1	15	13	1.27
424845--425092	89	2.8	89	83	1	302	25	23	10	41	1.86
424920--425077	44	3.6	44	74	5	138	24	23	12	39	1.89
425830--425941	55	2.1	54	83	5	136	35	11	18	33	1.87
426097--426159	32	1.9	32	87	9	92	39	12	12	34	1.82
426404--426530	30	4.2	31	78	6	118	22	21	14	41	1.89
432359--432636	154	1.8	154	83	6	375	38	18	18	24	1.93
432865--433232	140	2.6	139	84	9	467	44	9	10	35	1.71
432865--433252	143	2.7	140	82	8	480	43	10	10	35	1.73
436436--436900	47	10.1	47	78	6	405	40	16	22	21	1.92
436495--436817	179	1.8	179	85	1	459	39	17	23	20	1.92
436616--436688	38	1.9	38	83	5	94	45	15	21	17	1.85
438484--438513	2	15.0	2	100	0	60	50	0	0	50	1.00
448821--448846	13	2.0	13	100	0	52	30	15	15	38	1.88
451338--451393	20	2.9	19	71	5	58	32	14	12	41	1.83
453359--453440	31	2.7	31	92	1	130	26	10	24	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458495--458559	33	2.0	33	87	3	96	43	15	13	27	1.85
461664--461730	10	6.3	10	77	13	62	28	26	5	38	1.80
461665--461729	34	1.9	34	87	0	94	29	26	6	38	1.80
461730--461754	13	1.9	13	100	0	50	32	16	20	32	1.94
463493--463518	13	2.0	13	100	0	52	38	15	15	30	1.88
466787--466866	20	3.8	20	75	15	79	26	15	15	43	1.85
466852--466890	13	3.0	13	96	0	69	30	17	15	35	1.91
467011--467057	21	2.3	21	79	20	55	34	19	4	42	1.70
467013--467055	20	2.2	19	84	16	52	32	18	4	44	1.71
469410--469435	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11