genome.fa.s139.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold139
Parameters: 2 7 7 80 10 50 1000
Length:  1720190

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857040--857680	56	11.2	56	73	7	353	26	17	27	29	1.97
857040--857679	84	7.5	83	73	10	420	26	17	27	29	1.97
857363--857685	89	3.8	84	77	11	279	25	17	29	28	1.97
857699--857761	25	2.6	23	78	11	72	36	15	11	36	1.84
872265--872339	20	3.8	20	80	0	96	38	12	14	34	1.83
881852--882100	79	3.1	78	85	4	320	32	14	26	25	1.94
886124--886413	52	5.7	52	84	5	380	33	18	25	23	1.97
886377--886673	48	6.9	39	73	16	207	26	20	26	26	1.99
886323--886670	87	4.0	87	91	1	543	27	20	27	25	1.99
886501--886726	48	4.9	47	79	12	243	27	19	27	25	1.99
886588--886729	51	2.9	48	87	5	194	29	19	26	24	1.98
886890--887042	27	5.1	27	69	18	90	34	11	32	22	1.89
886863--886982	60	2.0	62	90	3	190	32	10	33	23	1.89
886932--887206	34	8.5	34	78	14	253	36	10	31	21	1.88
886719--887416	95	7.4	95	78	10	678	35	12	31	21	1.90
886951--887416	61	7.4	60	75	13	354	36	12	30	21	1.90
886985--887044	27	2.2	27	93	0	102	31	11	35	21	1.90
887114--887416	27	10.0	27	73	18	165	36	12	29	21	1.91
887156--887300	33	4.5	33	76	14	124	40	12	26	20	1.88
887216--887393	34	5.5	34	76	14	171	37	11	29	21	1.89
887397--887983	31	18.7	31	82	7	625	31	14	30	24	1.94
887060--887542	249	1.9	248	81	6	568	34	12	29	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887364--887983	61	10.0	61	82	6	633	31	13	30	23	1.94
887390--887993	156	3.8	153	82	8	646	32	13	30	23	1.93
887364--887983	187	3.3	187	87	5	796	31	13	30	23	1.94
888641--888706	31	2.3	26	85	12	78	39	4	18	37	1.71
889269--889309	15	2.6	16	84	11	57	4	0	9	85	0.73
889282--889307	12	2.2	12	100	0	52	0	0	7	92	0.39
899901--900019	51	2.3	52	80	9	138	31	11	24	31	1.91
899824--900074	129	1.9	129	80	1	288	34	12	24	28	1.92
899948--900232	80	3.6	78	77	4	286	33	12	26	27	1.93
899937--900233	159	1.9	159	86	2	427	35	12	25	26	1.92
905553--905637	10	8.8	9	74	18	64	83	8	7	1	0.86
905553--905635	15	5.3	15	78	11	78	83	8	7	1	0.87
905551--905636	17	4.9	17	76	16	70	83	8	6	1	0.85
905553--905625	29	2.5	29	84	8	94	83	8	6	1	0.86
906965--907234	66	4.2	65	79	8	293	20	30	14	35	1.92
906965--907203	99	2.5	99	81	8	287	20	30	14	34	1.92
906965--907234	33	8.4	32	80	10	257	20	30	14	35	1.92
907205--907262	27	2.1	27	87	0	80	18	25	15	39	1.91
907305--907418	27	4.0	27	76	16	104	24	31	13	30	1.93
907304--907520	68	3.5	60	80	13	206	22	31	11	34	1.91
907392--907554	68	2.4	69	88	3	249	20	31	12	35	1.90
907189--907554	34	11.4	33	69	19	143	21	31	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907529--907626	33	3.5	26	69	23	81	23	26	14	35	1.93
907535--907646	60	1.9	59	88	3	172	18	25	15	41	1.89
907250--907659	223	1.8	225	87	2	610	21	30	12	35	1.91
907646--907727	33	2.5	33	88	9	116	37	35	14	12	1.84
907646--907736	32	2.8	32	83	11	114	35	34	17	13	1.89
907745--908234	52	9.9	48	68	17	154	25	24	16	34	1.95
907840--907987	52	2.9	51	86	2	197	25	24	14	35	1.94
907745--907929	101	1.9	98	83	7	239	25	23	17	32	1.96
907851--908118	142	1.9	141	84	0	356	25	23	15	35	1.94
908000--908235	52	4.6	52	76	5	226	24	23	16	36	1.94
907993--908236	103	2.4	103	84	6	298	24	23	15	36	1.94
909000--909077	20	3.8	21	74	14	72	34	15	10	39	1.81
921510--921553	18	2.4	18	85	7	54	27	4	11	56	1.53
926605--926681	21	3.7	20	78	3	82	37	22	7	32	1.83
929940--929975	11	3.3	11	88	11	56	19	0	0	80	0.71
930269--930302	7	4.9	7	92	0	50	44	0	5	50	1.26
932806--932861	19	2.9	19	83	2	67	37	14	16	32	1.88
935173--935217	23	1.9	24	86	4	65	37	2	24	35	1.68
935223--935261	21	1.9	20	89	5	60	53	0	15	30	1.42
935379--935417	20	2.0	20	94	0	69	46	15	10	28	1.78
935359--935398	13	3.1	13	77	0	53	40	12	12	35	1.81
935428--935467	20	2.0	21	90	5	64	35	20	10	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936814--936844	16	2.0	15	93	6	53	32	9	0	58	1.31
938658--938686	14	2.0	15	93	6	51	31	6	27	34	1.83
942443--942467	13	1.9	13	100	0	50	40	12	16	32	1.84
942424--942489	33	2.0	33	84	0	87	42	10	13	33	1.79
942514--942570	19	2.9	19	76	7	69	31	15	12	40	1.85
943298--944061	49	15.9	49	77	9	649	32	17	24	25	1.97
943443--944072	238	2.6	238	93	0	1089	31	18	25	25	1.97
943593--943768	88	2.0	88	89	0	271	29	18	25	26	1.98
943543--943799	137	1.9	139	83	2	338	30	17	26	25	1.97
943491--943854	189	1.9	188	83	4	464	31	17	25	25	1.97
943830--944000	88	1.9	88	91	0	279	29	19	25	25	1.99
943783--944039	137	1.9	139	85	2	365	30	18	25	25	1.98
944177--944217	20	2.0	21	90	4	66	29	14	14	41	1.86
946564--946697	52	2.6	52	82	8	166	31	26	10	31	1.90
946703--946912	79	2.7	79	80	7	228	26	28	13	30	1.94
953065--953141	21	3.7	21	85	3	102	35	11	16	36	1.86
953177--953231	19	2.9	19	97	0	101	34	10	14	40	1.81
955650--955749	51	1.9	52	89	2	157	30	22	11	37	1.88
962085--964161	61	35.4	61	84	7	2175	26	26	19	28	1.99
962866--962968	36	3.2	36	58	28	84	26	23	19	31	1.98
962088--964160	474	4.4	472	88	6	2763	26	26	19	27	1.99
963332--963492	33	5.2	33	60	29	84	23	22	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963927--964026	33	3.2	33	61	28	81	23	23	18	36	1.95
963935--964037	36	3.2	36	61	28	93	26	24	19	30	1.98
962085--964157	534	3.9	532	88	4	3037	26	26	19	28	1.99
964912--964977	19	3.8	18	77	22	79	36	12	15	36	1.84
964931--964955	13	1.9	13	100	0	50	36	16	16	32	1.90
964910--964974	32	2.0	32	96	0	121	36	12	15	35	1.85
965017--965042	13	2.0	13	100	0	52	30	15	15	38	1.88
964997--965063	33	2.0	33	88	0	98	26	14	14	43	1.85
967398--967496	51	1.9	52	89	2	155	30	22	11	36	1.89
967504--967580	28	2.8	28	86	4	93	23	35	19	22	1.96
968901--969303	55	7.0	55	73	15	330	26	28	20	24	1.99
969107--969507	210	1.9	210	86	6	580	25	29	20	24	1.99
969344--970731	55	23.8	60	82	8	1444	26	28	19	25	1.99
970193--970279	27	3.2	27	63	15	70	25	29	20	24	1.99
970519--970600	26	2.9	29	70	23	93	28	30	20	20	1.98
971529--971600	31	2.3	32	92	2	119	33	13	16	36	1.89
971617--971659	21	2.0	21	100	0	86	44	9	18	27	1.80
974027--974159	52	2.6	50	82	8	160	33	24	9	33	1.86
974166--974357	79	2.4	79	84	1	233	26	29	15	28	1.96
975363--975678	34	9.8	34	76	10	231	36	13	31	19	1.90
975431--975493	32	2.0	32	93	0	108	36	14	30	19	1.91
975497--975577	27	3.0	27	87	3	101	30	13	32	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975646--975699	27	2.0	27	85	0	72	33	14	27	24	1.94
976127--976163	14	2.6	14	95	0	65	29	8	32	29	1.86
977335--977369	15	2.3	15	95	0	61	28	28	0	42	1.56
981961--981986	13	2.0	13	100	0	52	38	15	15	30	1.88
982433--982457	13	1.9	13	100	0	50	32	16	16	36	1.90
982413--982477	33	2.0	33	87	6	96	32	16	15	35	1.91
982550--982599	20	2.5	20	86	0	73	42	12	18	28	1.85
983657--984243	291	2.0	291	97	0	1111	46	12	9	32	1.72
984634--984687	19	2.7	19	82	5	63	38	12	16	31	1.87
984724--984751	13	2.2	13	100	0	56	28	14	17	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11