genome.fa.s139.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold139
Parameters: 2 7 7 80 10 50 1000
Length:  1720190

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984707--984769	33	1.9	33	87	6	92	31	17	12	38	1.87
991126--991163	19	2.0	19	100	0	76	10	21	10	57	1.61
991694--991741	25	2.0	24	87	4	69	85	8	0	6	0.74
991703--991758	17	3.4	16	82	7	67	85	8	1	3	0.78
991703--991758	16	3.3	16	82	9	67	85	8	1	3	0.78
993031--993491	30	15.0	31	82	8	557	21	29	16	32	1.95
993042--993491	185	2.4	185	94	1	771	22	29	16	32	1.96
993031--993491	215	2.1	214	87	3	649	21	29	16	32	1.95
993472--993666	34	5.8	35	86	5	244	20	30	12	36	1.89
993471--993662	102	1.9	101	88	5	289	20	30	12	35	1.90
993472--993661	68	2.8	67	89	4	283	20	30	12	36	1.90
993638--993699	27	2.4	25	81	7	79	25	29	14	30	1.95
993692--994823	101	12.0	89	81	9	695	24	26	18	30	1.98
993784--994822	49	21.7	48	79	8	939	24	26	18	30	1.98
993881--994722	150	6.0	132	79	10	605	24	26	18	30	1.98
994145--994866	101	7.3	100	85	4	833	22	26	18	32	1.97
993689--994866	199	6.2	196	78	11	1098	24	26	18	30	1.98
993689--994828	300	4.0	295	80	9	1097	24	26	18	30	1.98
998001--998220	85	2.6	85	75	4	219	50	12	19	18	1.77
998015--998175	43	3.8	43	76	4	130	50	9	19	19	1.76
998217--998345	40	3.3	40	74	13	133	41	17	25	15	1.89
998347--998691	46	7.5	45	75	8	212	40	8	26	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998335--998672	92	3.7	92	73	8	240	41	9	24	23	1.85
999287--999440	83	1.9	83	90	0	245	34	14	24	25	1.94
1003154--1003282	52	2.5	52	94	0	231	27	19	19	34	1.96
1003291--1003315	13	1.9	13	100	0	50	36	16	16	32	1.90
1003370--1003402	15	2.2	15	94	0	57	42	21	6	30	1.77
1003402--1003426	13	1.9	13	100	0	50	32	16	16	36	1.90
1009439--1009477	13	3.0	13	100	0	78	30	15	15	38	1.88
1009598--1009643	21	2.2	20	81	11	58	32	19	4	43	1.71
1012022--1012047	13	2.0	13	100	0	52	38	15	15	30	1.88
1011947--1012155	86	2.4	86	95	0	384	37	16	16	28	1.91
1012108--1012133	13	2.0	13	100	0	52	38	15	15	30	1.88
1013527--1013560	17	2.1	16	88	5	50	26	5	2	64	1.30
1016386--1016439	20	2.7	20	88	11	76	35	18	14	31	1.91
1016475--1016543	20	3.5	19	82	7	68	39	17	14	28	1.89
1018855--1018904	21	2.4	21	83	9	59	48	0	20	32	1.50
1018862--1018904	21	2.0	22	86	4	61	51	0	20	27	1.48
1019013--1019037	13	1.9	13	100	0	50	36	16	16	32	1.90
1021322--1021409	46	1.9	45	81	6	106	29	21	11	37	1.88
1021387--1021411	13	1.9	13	100	0	50	32	8	16	44	1.76
1030566--1031104	156	3.5	155	75	5	491	25	16	20	37	1.93
1030566--1031209	311	2.1	311	79	5	703	26	16	19	37	1.93
1034893--1034950	29	2.0	29	100	0	116	27	10	10	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036501--1036635	56	2.4	56	82	2	164	45	18	17	17	1.85
1036449--1036738	57	5.1	57	75	6	223	42	14	22	20	1.88
1036549--1036825	113	2.5	115	79	4	287	44	12	21	20	1.85
1036550--1036824	56	4.9	56	75	9	170	44	12	21	21	1.85
1036825--1037119	56	5.3	56	82	3	337	41	14	24	20	1.89
1038502--1038550	11	4.4	11	80	12	55	75	0	18	6	1.00
1038496--1038569	9	8.8	8	73	15	51	75	0	18	5	0.99
1038497--1038568	22	3.4	21	79	7	83	76	0	18	5	0.97
1039213--1039457	59	4.2	60	73	7	182	27	10	14	47	1.76
1039213--1039472	58	4.4	58	72	9	197	26	10	15	46	1.78
1043495--1043556	29	2.1	29	90	0	97	43	9	16	30	1.80
1065777--1065979	79	2.6	79	82	3	221	30	16	28	25	1.96
1065931--1066002	28	2.6	28	88	0	99	23	19	34	22	1.96
1065991--1066327	52	6.4	52	69	17	203	31	12	26	29	1.93
1066147--1066217	27	2.6	27	88	2	97	22	21	32	23	1.98
1065877--1066269	107	3.7	106	72	11	343	30	14	27	27	1.95
1065924--1066329	212	1.9	212	90	3	647	31	13	27	27	1.94
1066206--1066324	51	2.3	53	85	7	154	33	11	22	31	1.90
1068690--1068715	13	2.0	13	100	0	52	38	15	15	30	1.88
1068669--1068735	33	2.0	33	88	0	98	43	16	14	25	1.86
1068755--1068822	19	3.9	18	76	23	83	38	14	11	35	1.83
1068777--1068801	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068758--1068820	32	2.0	32	96	0	117	36	15	12	34	1.86
1069646--1070218	55	10.2	55	81	9	642	25	20	26	27	1.99
1069619--1070218	170	3.5	171	93	3	979	25	20	26	27	1.99
1069646--1070218	115	5.1	111	82	8	671	25	20	26	27	1.99
1071302--1071353	1	52.0	1	82	0	59	0	3	5	90	0.55
1071302--1071354	15	3.7	15	85	12	67	0	3	7	88	0.61
1083921--1083997	28	2.8	28	85	0	91	23	20	33	22	1.97
1083981--1084318	52	6.4	52	66	16	151	32	12	25	30	1.92
1084124--1084205	27	3.0	28	78	10	80	28	21	28	21	1.99
1084196--1084323	51	2.4	51	78	11	132	33	9	24	32	1.87
1086686--1086711	13	2.0	13	100	0	52	38	15	15	30	1.88
1086665--1086731	33	2.0	33	88	0	98	43	14	14	26	1.85
1086751--1086818	19	3.9	18	76	23	83	38	14	11	35	1.83
1086773--1086797	13	1.9	13	100	0	50	32	16	16	36	1.90
1086754--1086816	32	2.0	32	96	0	117	36	15	12	34	1.86
1093585--1093682	13	7.1	13	86	13	142	32	16	14	36	1.89
1093585--1093682	45	2.3	42	89	10	148	32	16	14	36	1.89
1093600--1093702	32	3.4	32	90	9	155	33	17	13	35	1.89
1094538--1095235	43	14.7	54	77	16	338	30	18	27	24	1.98
1094642--1095287	43	14.1	43	80	12	680	29	18	27	24	1.98
1094596--1095282	92	7.4	92	94	0	1149	29	18	27	24	1.98
1095280--1095541	32	8.2	32	91	5	404	19	18	33	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095551--1096073	34	15.8	33	79	7	418	33	14	32	19	1.92
1095550--1096046	100	5.0	98	80	9	402	33	14	33	19	1.91
1095556--1096042	66	7.3	66	77	11	424	33	14	33	19	1.92
1095552--1096073	133	3.9	132	81	8	510	33	14	32	19	1.92
1095550--1096073	167	3.2	165	78	9	489	33	14	32	19	1.92
1095554--1096099	66	8.3	66	76	9	393	33	14	32	19	1.92
1095951--1096140	31	6.1	31	83	7	190	33	15	29	22	1.94
1095951--1096140	61	3.0	61	80	12	190	33	15	29	22	1.94
1097082--1097133	25	2.1	24	86	10	70	0	11	7	80	0.89
1097098--1097146	15	3.2	16	77	13	59	0	10	10	79	0.93
1104463--1104560	19	5.8	18	71	28	90	36	17	12	33	1.87
1104482--1104538	13	3.9	13	76	24	60	33	17	14	35	1.90
1104461--1104558	32	3.0	32	96	1	178	35	17	12	34	1.87
1106471--1106510	21	1.9	22	90	10	66	40	0	25	35	1.56
1106466--1106517	21	2.5	20	78	9	59	44	0	26	28	1.55
1109007--1109570	165	3.4	163	78	10	531	32	10	8	48	1.68
1110043--1110077	10	3.4	10	92	4	52	85	0	14	0	0.59
1111169--1111620	156	2.9	154	82	5	485	27	17	19	35	1.94
1115500--1116208	166	4.3	165	82	3	844	27	9	8	54	1.61
1118049--1118079	15	2.1	15	93	0	53	48	0	6	45	1.28
1118324--1118383	30	2.0	30	96	0	111	30	15	20	35	1.93
1119030--1119381	156	2.3	156	80	5	372	45	15	14	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119142--1119476	157	2.1	156	77	7	340	42	17	14	25	1.87
1121147--1121234	18	4.9	17	72	16	70	69	3	1	26	1.11
1123871--1123933	25	2.5	25	78	0	63	53	3	1	41	1.26
1123923--1123965	17	2.5	17	80	3	50	76	0	2	20	0.89
1125062--1125096	2	17.5	2	87	0	52	42	0	5	51	1.25
1125062--1125096	16	2.2	16	100	0	70	42	0	5	51	1.25
1125809--1125842	16	2.1	16	100	0	68	26	26	11	35	1.91
1130098--1130134	2	18.5	2	100	0	74	51	0	48	0	1.00
1130984--1131014	2	15.5	2	100	0	62	51	0	0	48	1.00
1131014--1131047	2	17.0	2	100	0	68	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11