genome.fa.s158.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold158
Parameters: 2 7 7 80 10 50 1000
Length:  1811518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1497 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759816--1759852	18	2.1	18	100	0	74	29	21	5	43	1.75
1760716--1760763	24	2.0	24	95	0	87	37	18	29	14	1.91
1762803--1762848	24	1.9	25	91	8	78	45	17	8	28	1.78
1763132--1763169	17	2.2	17	95	0	67	47	2	0	50	1.15
1764118--1764165	22	2.2	22	81	7	53	54	2	2	41	1.24
1764126--1764167	22	1.9	22	90	0	66	54	0	0	45	0.99
1766201--1766243	20	2.2	19	87	4	59	58	0	0	41	0.98
1769166--1769220	22	2.5	22	100	0	110	61	9	10	18	1.54
1770134--1770208	20	3.8	20	80	3	80	40	12	13	34	1.81
1770131--1770208	40	2.0	39	87	2	111	39	12	12	34	1.82
1770776--1771277	32	15.7	32	93	0	718	16	18	34	30	1.93
1770791--1771277	64	7.6	64	95	0	812	15	18	34	31	1.93
1770814--1771277	96	4.8	96	96	0	838	14	18	34	31	1.92
1771265--1771751	27	17.8	27	91	2	776	28	14	34	22	1.94
1771265--1771751	82	5.9	81	91	4	762	28	14	34	22	1.94
1779242--1779296	22	2.5	22	100	0	110	61	9	10	18	1.54
1780210--1780284	20	3.8	20	80	3	80	40	12	13	34	1.81
1780207--1780284	40	2.0	39	87	2	111	39	12	12	34	1.82
1787110--1787157	13	3.8	13	77	5	53	43	0	4	52	1.20
1787058--1787131	30	2.5	29	71	16	71	51	6	2	39	1.43
1787107--1787171	25	2.5	27	82	9	82	43	3	4	49	1.39
1787656--1787726	2	35.5	2	82	0	61	45	7	4	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787650--1787698	16	3.1	16	84	0	62	46	10	6	36	1.63
1787670--1787725	24	2.3	24	84	0	76	42	5	5	46	1.49
1787670--1787723	22	2.5	22	84	0	72	42	5	5	46	1.50
1789544--1789591	21	2.3	21	82	7	53	33	29	4	33	1.77
1789826--1789887	15	4.0	15	78	15	72	37	0	0	62	0.95
1789829--1789898	16	4.4	16	78	5	70	37	0	0	62	0.95
1789830--1789912	28	2.9	28	84	10	89	36	0	0	63	0.94
1790522--1790627	42	2.5	42	88	8	162	45	0	2	50	1.22
1790542--1790611	19	3.5	19	69	14	59	41	1	2	54	1.24
1790523--1790624	19	4.9	20	64	19	57	45	0	1	51	1.19
1791549--1791597	24	2.0	24	92	0	80	34	16	10	38	1.82
1791556--1791610	23	2.3	24	87	3	76	34	18	10	36	1.86
1792447--1792496	25	2.0	25	84	11	66	50	2	0	48	1.12
1793232--1793386	10	13.9	10	67	24	55	47	1	3	48	1.26
1793232--1793366	12	11.5	12	68	22	65	46	1	2	48	1.26
1793255--1793292	15	2.8	14	84	15	53	42	0	5	52	1.24
1793275--1793366	34	2.7	33	77	11	87	46	2	3	47	1.30
1793315--1793442	53	2.4	52	80	9	141	50	1	3	45	1.27
1802095--1802137	21	2.0	22	90	4	70	48	0	0	51	1.00
1802111--1802148	18	2.1	19	95	5	69	50	0	0	50	1.00
1802095--1802153	21	3.0	20	80	14	68	50	0	0	49	1.00
1802174--1802218	18	2.5	18	81	0	54	64	0	8	26	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802278--1802322	17	2.6	17	82	13	56	37	0	0	62	0.96
1802285--1802320	16	2.2	16	90	9	56	38	0	0	61	0.96
1802382--1802444	31	2.0	31	84	12	83	60	1	0	38	1.07
1804154--1804195	15	2.7	16	85	14	61	35	0	0	64	0.94
1805347--1805386	19	2.0	21	90	9	66	30	0	0	70	0.88
1806644--1806676	12	2.8	12	90	0	57	54	3	12	30	1.52
1808734--1808794	22	2.9	22	72	13	56	55	0	0	44	0.99
1808975--1809032	29	2.0	30	89	3	91	50	0	5	44	1.24
1809969--1810000	2	16.0	2	93	0	55	53	0	0	46	1.00
1810534--1810618	10	9.4	9	70	17	52	44	1	1	52	1.16
1810534--1810630	9	10.6	10	68	20	61	45	1	2	51	1.19
1810871--1810929	29	2.0	29	93	6	102	33	13	8	44	1.74
1811141--1811186	18	2.5	18	85	3	65	32	4	2	60	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!