genome.fa.s158.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold158
Parameters: 2 7 7 80 10 50 1000
Length:  1811518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1497 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210987--1211134	53	2.8	52	81	4	163	35	16	23	25	1.95
1211075--1211201	67	1.9	68	88	1	193	38	12	25	23	1.90
1210415--1211575	445	2.6	445	94	0	2011	36	14	24	24	1.93
1211151--1211304	52	2.9	54	82	3	195	36	15	23	24	1.94
1211258--1211347	43	2.1	43	87	4	128	32	17	24	25	1.97
1211434--1211575	52	2.7	52	84	0	149	35	18	23	22	1.96
1211482--1211759	49	5.9	49	78	12	294	31	19	24	25	1.98
1211484--1211760	92	3.0	92	90	1	419	31	19	24	24	1.98
1211765--1212038	33	8.5	32	86	4	356	20	18	32	28	1.96
1211765--1212038	64	4.2	65	87	5	387	20	18	32	28	1.96
1212051--1212398	34	10.7	34	73	14	170	33	13	32	20	1.91
1212044--1212215	68	2.5	70	86	4	233	37	11	31	19	1.87
1212183--1212298	27	4.2	27	74	11	85	25	15	33	25	1.95
1212006--1212463	222	2.0	224	94	1	803	31	13	32	22	1.93
1213920--1213975	11	5.1	11	83	12	71	0	0	12	87	0.54
1213920--1213975	9	6.4	9	83	6	71	0	0	12	87	0.54
1213920--1213975	21	2.8	21	82	15	73	0	0	12	87	0.54
1213931--1213975	16	2.8	15	84	15	63	0	0	11	88	0.50
1213920--1213976	30	1.9	30	89	7	89	0	0	14	85	0.59
1227936--1227960	13	1.9	13	100	0	50	36	16	16	32	1.90
1228003--1228087	19	4.7	19	79	18	101	37	17	11	32	1.86
1228041--1228065	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228022--1228085	32	2.0	33	96	3	121	34	18	12	34	1.89
1231159--1231184	13	2.0	13	100	0	52	38	15	15	30	1.88
1231137--1231204	33	2.1	32	88	2	100	33	14	16	35	1.89
1231290--1231340	20	2.5	20	87	0	66	33	15	15	35	1.90
1231919--1231962	21	2.0	22	86	4	63	34	25	2	38	1.68
1233812--1233849	13	2.9	13	96	0	67	34	18	15	31	1.92
1240019--1240044	13	2.0	13	100	0	52	38	15	15	30	1.88
1239997--1240064	33	2.1	32	88	2	100	33	14	16	35	1.89
1240096--1240148	20	2.6	21	84	3	72	28	16	15	39	1.89
1240136--1240164	13	2.2	13	100	0	58	37	13	17	31	1.89
1245839--1245877	17	2.4	16	86	4	51	7	2	12	76	1.09
1248017--1248042	13	2.0	13	100	0	52	30	15	15	38	1.88
1250589--1250625	13	2.8	13	100	0	74	40	16	13	29	1.86
1252710--1252740	15	2.1	15	93	0	53	12	22	16	48	1.80
1254544--1254588	21	2.1	21	84	8	56	22	20	4	53	1.63
1256803--1256828	13	2.0	13	100	0	52	30	15	15	38	1.88
1264157--1264207	21	2.5	22	84	9	63	33	19	0	47	1.50
1264498--1264544	22	2.1	22	84	11	60	29	4	19	46	1.68
1265127--1265189	20	3.4	19	76	8	67	36	14	15	33	1.88
1270716--1270740	13	1.9	13	100	0	50	36	16	16	32	1.90
1270802--1270826	13	1.9	13	100	0	50	32	16	16	36	1.90
1270835--1270958	52	2.4	52	91	1	196	36	17	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1271741--1271784	19	2.3	19	96	0	79	25	2	22	50	1.61
1277851--1277904	13	4.1	13	80	9	56	83	12	0	3	0.78
1277846--1277915	17	4.5	16	75	12	74	84	12	0	2	0.73
1277848--1277914	30	2.3	29	89	2	98	83	13	0	2	0.76
1278234--1278268	18	1.9	18	88	0	52	80	2	14	2	0.95
1279212--1279293	30	2.7	31	86	7	114	28	30	17	24	1.97
1279273--1279654	34	11.3	34	82	8	406	21	33	12	33	1.90
1279472--1279687	100	2.1	94	81	13	227	23	32	12	31	1.92
1279637--1279708	33	2.2	33	94	0	126	26	34	16	22	1.95
1279708--1280395	49	14.8	48	81	11	783	26	24	18	31	1.97
1279797--1279864	22	3.1	22	62	19	52	25	23	19	32	1.97
1279708--1280404	92	7.5	92	92	3	1092	26	24	17	31	1.97
1280305--1280458	52	2.9	53	79	8	177	25	24	14	34	1.94
1280408--1280534	67	1.9	68	86	1	184	25	25	11	37	1.90
1281328--1281352	13	1.9	13	100	0	50	36	16	16	32	1.90
1281447--1281570	52	2.4	52	91	1	196	37	18	16	27	1.93
1282352--1282395	19	2.3	19	96	0	79	25	2	22	50	1.61
1288444--1288479	10	3.7	10	88	3	56	88	0	0	11	0.50
1288735--1288766	11	2.8	11	95	4	55	90	0	9	0	0.45
1288735--1288779	16	2.9	15	87	6	63	86	4	8	0	0.69
1288735--1288780	20	2.2	21	84	3	58	84	4	10	0	0.75
1288821--1288854	17	2.0	17	88	0	50	79	2	14	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289798--1289879	30	2.7	31	86	7	114	28	30	17	24	1.97
1289859--1290273	33	12.3	34	83	7	438	20	32	12	33	1.90
1289883--1290252	100	3.6	100	83	7	451	20	32	12	35	1.90
1289859--1290273	68	6.1	67	78	10	257	20	32	12	33	1.90
1289830--1290306	100	4.7	94	76	12	271	21	32	13	32	1.92
1290256--1290327	33	2.2	33	94	0	126	26	34	16	22	1.95
1290322--1290786	43	10.1	43	82	11	516	26	25	17	30	1.97
1290327--1290830	49	10.8	48	81	10	539	26	24	17	30	1.97
1290327--1290839	92	5.5	92	89	5	751	26	24	17	31	1.97
1290508--1290575	22	3.1	22	60	19	52	25	25	17	32	1.97
1290740--1290893	52	2.9	53	79	8	177	25	24	14	34	1.94
1290843--1290969	67	1.9	68	85	1	175	24	25	12	37	1.90
1291849--1291873	13	1.9	13	100	0	50	32	16	16	36	1.90
1291882--1292005	52	2.4	52	93	1	205	36	18	16	28	1.93
1295272--1295325	20	2.7	20	85	2	63	35	14	11	38	1.82
1302791--1302854	13	5.5	13	68	22	52	31	17	12	39	1.87
1302774--1302849	33	2.3	33	86	4	100	32	17	14	35	1.90
1304941--1304971	13	2.4	13	94	0	53	35	16	12	35	1.87
1304925--1304991	33	2.0	32	88	11	100	35	13	17	32	1.89
1308135--1308732	49	12.4	48	78	11	612	23	26	18	31	1.97
1308202--1308366	43	3.9	40	77	10	143	25	27	20	27	1.99
1308237--1308732	101	5.0	101	92	3	757	22	26	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1308237--1308723	150	3.3	150	81	7	568	22	26	18	32	1.97
1309592--1309618	13	2.1	13	100	0	54	29	14	14	40	1.86
1309664--1309702	20	2.0	20	94	0	69	43	7	15	33	1.75
1317960--1318167	31	6.9	30	78	10	174	25	30	17	26	1.97
1317966--1318114	30	4.9	30	80	11	178	24	30	18	26	1.98
1317966--1318127	61	2.7	61	91	1	254	25	30	17	25	1.97
1318119--1318173	28	2.0	27	89	10	85	25	32	14	27	1.95
1318119--1318233	28	3.9	28	72	17	83	23	30	13	32	1.94
1318143--1318208	34	1.9	34	90	0	105	21	27	12	39	1.88
1318301--1318532	49	4.8	49	82	10	280	23	27	18	30	1.98
1318380--1318532	52	3.0	51	87	5	204	24	28	18	29	1.98
1318501--1318565	33	2.0	33	93	0	112	23	26	23	27	2.00
1318450--1318791	82	4.0	82	83	11	416	24	25	19	29	1.99
1318532--1319111	49	12.0	48	76	12	526	23	25	18	32	1.97
1318624--1319111	101	5.0	101	90	3	698	23	25	17	32	1.97
1318532--1319111	201	3.0	198	85	8	738	23	25	18	32	1.97
1319950--1319976	13	2.1	13	100	0	54	29	14	14	40	1.86
1320026--1320078	20	2.7	20	96	0	97	28	15	16	39	1.89
1321121--1321145	13	1.9	13	100	0	50	36	16	16	32	1.90
1321101--1321167	33	2.0	33	85	0	89	32	10	14	41	1.80
1321208--1321232	13	1.9	13	100	0	50	32	16	16	36	1.90
1321241--1321369	52	2.5	52	94	0	222	34	17	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1334579--1334655	28	2.8	28	83	0	91	24	20	32	22	1.98
1336865--1336890	13	2.0	13	100	0	52	38	15	15	30	1.88
1336930--1336997	19	3.9	18	76	23	83	38	14	11	35	1.83
1336952--1336976	13	1.9	13	100	0	50	32	16	16	36	1.90
1336933--1336995	32	2.0	32	96	0	117	36	15	12	34	1.86
1337033--1337175	20	7.1	20	86	4	198	32	12	16	37	1.87
1337033--1337175	41	3.5	41	94	2	236	32	12	16	37	1.87
1337033--1337169	61	2.2	61	89	3	204	32	13	16	37	1.87
1337782--1338249	55	8.4	55	85	7	599	23	20	28	27	1.99
1338047--1338129	26	3.1	26	62	16	60	16	19	31	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13