genome.fa.s158.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold158
Parameters: 2 7 7 80 10 50 1000
Length:  1811518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1497 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290480--290566	24	3.5	24	83	14	106	82	13	3	0	0.79
290466--290560	18	5.1	18	83	6	109	83	12	3	1	0.82
292079--292643	29	19.1	30	88	3	799	28	30	16	23	1.96
292078--292643	59	9.6	59	90	2	852	28	30	16	24	1.96
292078--292683	88	6.9	87	87	4	709	29	30	16	23	1.96
292710--293089	98	3.8	97	77	11	340	23	26	17	32	1.97
292700--292999	49	6.1	49	78	9	301	24	25	16	33	1.96
293881--293937	13	3.9	13	72	24	51	35	15	17	31	1.92
293863--293961	32	3.1	32	94	1	171	35	13	17	34	1.88
293863--293956	19	5.6	18	68	28	73	35	13	17	34	1.89
293999--294023	13	1.9	13	100	0	50	32	16	16	36	1.90
294032--294162	52	2.5	52	98	0	253	34	19	19	27	1.95
299587--299627	21	2.0	21	86	13	59	46	0	24	29	1.53
300374--300422	20	2.4	21	89	3	73	32	14	16	36	1.89
303205--303249	22	2.1	21	83	4	54	53	4	2	40	1.33
303217--303254	20	1.9	19	85	15	51	57	2	0	39	1.12
303853--303882	15	2.0	15	93	0	51	30	0	0	70	0.88
304244--304277	2	17.5	2	93	6	61	50	0	0	50	1.00
304245--304274	15	2.0	15	100	0	60	53	0	0	46	1.00
304244--304276	17	1.9	17	100	0	66	51	0	0	48	1.00
305256--305289	3	11.7	3	93	6	61	64	0	0	35	0.94
306055--306110	14	4.2	13	72	18	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306055--306110	27	2.1	26	86	3	76	35	0	0	64	0.94
307399--307438	15	2.8	14	84	3	53	55	0	2	42	1.13
307338--307429	34	2.6	36	69	13	82	56	0	4	39	1.19
308208--308253	15	3.1	15	82	11	51	39	0	4	56	1.19
308251--308289	9	4.2	9	84	15	53	74	0	0	25	0.82
308837--308868	15	2.1	15	94	0	55	46	0	0	53	1.00
314324--314366	22	2.0	22	90	9	70	39	20	16	23	1.92
314989--315028	2	20.0	2	100	0	80	50	0	0	50	1.00
318230--318288	6	9.8	6	73	0	55	42	3	6	47	1.46
318230--318288	8	7.4	8	84	0	55	42	3	6	47	1.46
318223--318287	20	3.2	20	88	0	94	40	4	7	47	1.53
319636--319661	8	3.2	8	100	0	52	0	11	0	88	0.52
322199--322223	2	12.5	2	100	0	50	48	0	0	52	1.00
325256--325323	20	3.6	19	76	11	68	69	0	0	30	0.89
325255--325319	25	2.7	23	82	15	71	70	0	0	29	0.87
325256--325425	9	18.0	9	69	20	75	61	0	1	37	1.08
325256--325425	19	9.0	18	70	21	75	61	0	1	37	1.08
325358--325416	29	2.1	28	84	15	77	57	0	1	40	1.09
325260--325413	10	15.8	10	68	21	53	60	0	0	38	1.06
335082--335138	19	2.9	19	87	10	80	35	17	14	33	1.90
340771--340833	19	3.3	18	81	12	81	34	15	17	31	1.92
342291--342376	43	2.0	43	100	0	172	34	9	18	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346739--346780	21	2.0	22	85	4	59	54	0	7	38	1.28
347631--347733	38	2.7	38	78	3	118	29	15	19	35	1.93
352242--352282	20	2.0	20	85	0	55	36	7	2	53	1.42
356395--356442	20	2.4	20	86	6	62	45	12	10	31	1.76
356476--356538	19	3.6	19	74	24	75	34	17	12	34	1.88
356463--356538	32	2.4	32	95	0	134	34	17	14	34	1.90
356495--356519	13	1.9	13	100	0	50	32	16	16	36	1.90
358691--358743	21	2.6	21	80	11	56	35	5	0	58	1.22
358968--359021	18	3.0	18	71	17	58	50	3	1	44	1.30
360952--361009	24	2.5	23	77	8	64	44	0	0	55	0.99
360961--361005	16	2.9	16	81	12	58	51	0	0	48	1.00
360965--361005	15	2.6	16	85	14	59	53	0	0	46	1.00
367768--367841	21	3.4	21	78	10	69	45	0	0	54	1.00
370112--370141	2	15.0	2	100	0	60	50	0	0	50	1.00
371257--371328	16	4.8	16	70	25	59	61	0	0	38	0.96
371259--371331	14	4.9	15	77	14	71	60	0	0	39	0.97
377964--378015	20	2.7	20	90	3	79	26	13	21	38	1.90
378420--378486	33	2.0	33	88	0	98	34	11	13	40	1.81
378440--378464	13	1.9	13	100	0	50	36	16	16	32	1.90
378527--378551	13	1.9	13	100	0	50	32	16	16	36	1.90
386928--386979	20	2.7	20	90	3	79	26	13	21	38	1.90
387021--387073	20	2.6	21	76	8	56	33	16	11	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387061--387085	13	1.9	13	100	0	50	36	16	16	32	1.90
387038--387106	33	2.1	31	82	12	77	34	17	14	33	1.90
387554--387805	52	4.8	52	73	4	177	35	14	22	27	1.93
387545--387805	104	2.5	104	77	2	247	36	14	22	26	1.92
388046--388200	52	3.0	53	76	7	154	38	13	21	25	1.91
388268--388603	32	10.5	32	81	4	363	20	18	31	30	1.96
388252--388603	97	3.7	96	82	3	415	21	17	31	29	1.96
388613--388695	31	2.6	32	80	7	87	39	10	28	20	1.86
388613--388703	34	2.8	32	80	6	94	37	10	29	21	1.88
388691--388793	30	3.5	30	79	2	127	25	13	34	26	1.93
388714--388895	33	6.0	29	76	9	94	32	13	29	24	1.93
388683--388888	59	3.4	59	78	5	178	28	13	32	25	1.93
388795--388926	33	4.0	33	82	3	131	37	12	27	23	1.90
388848--388927	34	2.4	33	87	2	106	40	12	25	22	1.89
393145--393600	161	2.8	161	87	3	673	34	10	12	41	1.78
397883--397907	13	1.9	13	100	0	50	32	16	16	36	1.90
398000--398035	17	2.1	17	94	0	63	19	30	8	41	1.81
397998--398061	10	6.3	10	72	22	53	21	29	9	39	1.85
398017--398066	24	2.1	24	88	0	73	20	28	12	40	1.87
400113--400159	15	3.1	15	80	14	51	80	4	0	14	0.85
402943--402972	13	2.3	13	100	0	60	36	13	16	33	1.88
402922--402989	33	2.1	33	89	10	104	36	16	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403644--403754	28	3.9	28	92	3	177	33	25	9	32	1.87
405027--405071	20	2.1	22	84	8	58	13	24	42	20	1.87
410058--410127	3	23.3	3	88	0	104	31	32	0	35	1.58
411717--411749	13	2.5	13	100	0	66	39	15	15	30	1.88
411795--411867	20	3.7	19	83	7	76	38	16	15	30	1.89
411795--411848	19	2.8	20	85	2	74	37	16	14	31	1.89
412227--412596	47	7.8	47	75	8	284	22	21	16	40	1.91
412228--412642	96	4.4	95	74	8	326	22	20	16	40	1.91
412228--412642	143	2.9	144	79	7	407	22	20	16	40	1.91
412217--412642	47	8.9	47	75	8	253	22	20	15	41	1.90
412723--413233	84	6.1	84	83	3	573	20	29	14	36	1.92
412778--412989	41	5.1	41	69	12	135	20	30	14	34	1.92
412832--412967	43	3.2	43	72	8	134	22	31	15	30	1.95
412767--413293	251	2.1	255	87	2	740	19	29	14	35	1.92
414308--415033	165	4.4	163	82	6	783	29	10	8	51	1.66
414760--414795	18	1.9	19	88	5	56	36	13	2	47	1.58
414287--415022	164	4.5	164	82	5	794	29	10	8	51	1.65
414395--415022	329	1.9	327	84	3	852	30	10	7	51	1.65
414885--415174	145	2.0	148	84	7	387	29	9	8	52	1.63
415954--416061	36	3.1	34	78	18	114	73	8	3	14	1.21
415958--416019	19	3.4	18	72	17	56	72	8	3	16	1.21
416010--416070	26	2.5	24	84	10	86	80	6	4	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415935--416070	44	3.1	43	75	15	125	75	7	3	13	1.16
416867--416924	30	1.9	30	89	0	89	29	17	6	46	1.74
416907--416973	20	3.3	20	82	0	89	34	14	10	40	1.81
416907--416983	20	3.8	20	83	6	84	32	15	11	40	1.84
422047--422314	48	5.5	48	88	7	407	35	16	28	19	1.94
422047--422320	99	2.8	99	92	2	457	35	16	28	19	1.93
422439--422764	28	11.1	28	82	7	251	21	18	30	28	1.97
422440--422764	56	5.5	57	80	7	280	21	18	31	28	1.97
422635--423198	32	17.6	32	90	0	831	21	17	28	32	1.96
423259--423443	28	6.7	27	85	6	219	28	15	31	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13