genome.fa.s158.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold158
Parameters: 2 7 7 80 10 50 1000
Length:  1811518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1497 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569495--569573	20	3.7	20	78	15	77	44	15	15	25	1.85
573412--573456	21	2.1	21	84	8	56	22	20	4	53	1.63
575670--575695	13	2.0	13	100	0	52	30	15	15	38	1.88
575731--575806	21	3.7	21	82	3	109	28	18	11	40	1.86
575751--575824	20	3.7	20	81	3	103	31	20	13	35	1.91
575731--575824	41	2.3	41	100	0	188	29	19	12	38	1.89
576490--576524	3	11.7	3	100	0	70	65	0	0	34	0.93
576868--576909	19	2.2	20	86	4	59	66	0	0	33	0.92
576996--577025	15	2.1	14	93	6	51	63	3	0	33	1.11
578156--578270	41	2.7	41	77	10	117	54	0	0	44	1.06
579084--579113	15	2.0	15	93	0	51	23	0	0	76	0.78
579065--579125	8	7.6	8	73	12	54	31	0	0	68	0.89
579188--579229	18	2.2	18	87	8	57	71	0	0	28	0.86
579949--580032	27	3.1	25	83	11	87	54	1	0	44	1.07
580182--580207	12	2.2	12	100	0	52	34	0	23	42	1.54
582001--582054	4	14.5	4	85	14	55	27	0	0	72	0.85
581980--582046	36	1.9	34	85	11	91	26	0	0	73	0.84
581998--582054	25	2.3	26	90	6	91	28	0	0	71	0.86
582156--582202	20	2.4	19	82	6	58	36	2	4	57	1.30
583034--583084	16	3.5	15	79	10	52	41	1	0	56	1.10
583079--583125	10	4.6	10	86	5	67	55	2	2	40	1.24
586673--586711	20	2.0	20	100	0	78	33	0	41	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587737--587765	10	2.7	11	89	10	51	68	0	0	31	0.89
587738--587768	16	2.0	15	93	6	53	67	0	0	32	0.91
590663--590723	19	3.3	19	80	17	74	45	0	1	52	1.10
590663--590745	19	4.8	18	73	20	63	44	0	1	54	1.08
590720--590798	21	4.0	21	66	22	55	40	0	0	59	0.97
590663--590763	39	2.6	37	76	14	98	43	0	0	55	1.06
590663--590764	18	5.4	17	71	22	55	43	0	0	55	1.06
590686--590772	36	2.7	33	74	15	83	42	0	0	57	0.98
590719--590798	29	2.8	29	79	12	94	41	0	0	58	0.98
591326--591400	20	3.8	20	87	7	116	33	16	13	37	1.87
601992--602068	21	3.7	21	89	3	111	36	11	16	35	1.86
602149--602203	20	2.8	20	82	0	74	23	14	16	45	1.84
610729--611413	57	11.9	57	86	3	889	29	29	17	24	1.97
610729--611413	85	8.0	85	90	2	910	29	29	17	24	1.97
610729--611413	142	4.8	142	88	3	930	29	29	17	24	1.97
613192--613231	16	2.5	16	91	0	71	40	17	7	35	1.78
615812--615859	19	2.4	20	82	10	62	37	0	4	58	1.18
617216--617283	24	2.8	24	75	4	66	45	26	11	16	1.81
617513--617607	40	2.4	40	100	0	190	37	17	12	31	1.88
621883--621923	3	13.7	3	94	0	73	34	2	0	63	1.08
622367--622392	2	13.0	2	100	0	52	50	0	0	50	1.00
622731--622957	119	1.9	119	90	3	370	48	4	1	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624037--624068	2	17.0	2	87	12	50	50	0	0	50	1.00
624827--624861	15	2.3	15	90	9	54	54	0	0	45	0.99
625053--625349	147	1.9	156	82	11	373	37	11	16	35	1.84
630177--630247	30	2.4	30	86	9	92	40	1	1	56	1.17
630147--630223	24	3.2	24	77	16	72	40	0	2	57	1.13
630194--630260	14	4.7	13	74	18	53	40	1	2	55	1.24
630177--630267	30	3.0	30	81	12	82	41	1	2	54	1.19
631841--631880	21	2.1	18	86	13	53	57	0	0	42	0.98
632698--632754	2	28.5	2	100	0	114	49	0	0	50	1.00
632698--632766	12	6.0	11	94	3	59	46	0	0	53	1.00
633181--633219	2	19.5	2	100	0	78	51	0	0	48	1.00
633872--633907	17	2.1	17	94	0	63	30	5	5	58	1.44
635423--635450	6	4.7	6	100	0	56	17	17	14	50	1.79
636646--636680	18	1.9	18	88	11	54	25	0	8	65	1.21
637227--637273	23	2.0	25	87	8	71	27	0	12	59	1.34
638143--638175	11	2.9	11	95	4	57	87	0	9	3	0.63
638407--638454	24	2.0	24	100	0	96	37	25	12	25	1.91
642077--642122	20	2.3	20	85	7	58	41	17	15	26	1.88
642190--642248	21	2.9	21	80	12	68	40	15	11	32	1.83
642842--642866	13	1.9	13	100	0	50	36	16	16	32	1.90
642929--642953	13	1.9	13	100	0	50	32	16	16	36	1.90
642962--643090	52	2.5	52	92	0	204	35	14	17	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653484--653514	16	1.9	16	93	0	53	29	6	16	48	1.70
654171--654223	20	2.6	21	82	8	65	37	7	16	37	1.78
654174--654223	21	2.5	20	80	9	57	36	8	18	38	1.80
654250--654351	21	4.9	21	83	11	113	38	14	14	32	1.87
654250--654351	41	2.4	42	82	12	113	38	14	14	32	1.87
658089--658237	52	2.9	51	88	4	226	30	17	18	33	1.94
658226--658250	13	1.9	13	100	0	50	36	16	16	32	1.90
658294--658318	13	1.9	13	100	0	50	32	16	16	36	1.90
659257--659442	48	4.1	43	76	11	192	30	16	24	28	1.97
659214--659434	92	2.3	94	86	6	293	31	16	23	28	1.96
659486--660127	57	10.9	59	71	13	338	25	15	29	28	1.96
659486--660127	30	21.7	30	75	11	454	25	15	29	28	1.96
659462--659941	210	2.3	202	92	5	766	23	15	31	29	1.95
659683--660092	150	2.7	150	92	2	642	26	15	29	28	1.96
659462--660127	210	3.2	207	85	7	649	25	15	30	29	1.96
661566--661691	1	126.0	1	76	0	117	0	0	11	88	0.53
661566--661691	9	13.8	9	80	14	143	0	0	11	88	0.53
677350--677374	10	2.5	10	100	0	50	40	8	32	20	1.81
679732--679972	97	2.5	97	87	1	340	28	10	30	30	1.90
682176--682250	20	3.8	19	82	7	96	40	14	13	32	1.85
682196--682332	71	1.9	71	92	0	229	42	13	13	31	1.82
682265--682318	20	2.7	20	79	0	72	40	9	12	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682148--682321	91	1.9	89	82	4	215	40	12	15	31	1.85
682981--683090	45	2.3	47	81	9	127	35	20	22	21	1.96
683171--683261	32	3.0	30	85	6	105	23	17	28	30	1.97
683171--683673	28	17.7	28	80	6	453	22	16	30	30	1.96
684788--684880	14	6.6	14	70	18	52	2	3	11	82	0.87
684799--684880	37	2.1	38	84	10	105	2	3	10	82	0.88
696252--696445	97	2.1	92	85	6	255	32	9	27	30	1.88
698692--698764	20	3.7	20	78	7	67	43	10	12	32	1.77
698782--698827	20	2.3	20	81	3	58	39	17	10	32	1.84
698646--698827	91	2.0	89	86	4	249	41	12	15	30	1.84
700151--700298	78	1.9	78	83	6	192	45	10	15	28	1.80
700260--700329	28	2.5	28	76	0	77	34	17	22	25	1.96
700176--700390	106	2.0	107	84	5	283	43	11	17	27	1.83
700305--700912	79	7.7	79	77	6	480	40	11	18	29	1.85
703313--703440	52	2.5	51	84	1	157	45	12	11	30	1.78
703508--703561	20	2.6	21	85	2	74	33	16	9	40	1.80
704373--704814	62	7.2	62	84	1	494	33	16	22	27	1.96
704328--704787	185	2.5	185	84	3	548	34	16	22	27	1.95
704328--704814	123	3.9	124	80	2	503	33	16	22	27	1.95
704783--704849	35	1.9	35	90	0	107	37	16	17	28	1.92
704717--704911	97	2.0	97	86	3	268	33	15	20	29	1.94
704813--705013	62	3.2	62	86	1	269	34	16	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705017--705252	30	7.9	30	79	2	208	27	14	29	27	1.95
711588--712230	79	8.1	79	77	8	524	40	11	19	29	1.86
711588--712219	237	2.7	236	82	3	743	40	11	19	29	1.86
712245--712354	51	2.2	52	85	6	145	40	7	17	34	1.77
716128--716163	10	3.6	10	92	0	54	52	5	0	41	1.24
717459--717483	13	1.9	13	100	0	50	36	16	16	32	1.90
717439--717508	33	2.1	33	86	0	95	35	12	14	37	1.84
717549--717573	13	1.9	13	100	0	50	32	16	16	36	1.90
717582--717706	52	2.4	52	94	0	214	36	17	17	28	1.93
721760--721785	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13