genome.fa.s162.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold162
Parameters: 2 7 7 80 10 50 1000
Length:  1959167

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1418 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831950--1831978	2	14.5	2	100	0	58	51	0	0	48	1.00
1837767--1837822	20	2.8	20	100	0	112	35	14	10	39	1.81
1841562--1841824	127	2.1	127	82	2	314	44	10	13	31	1.78
1841621--1842010	63	6.2	63	73	8	251	41	12	13	32	1.83
1842518--1842590	24	3.0	24	79	0	83	35	12	19	32	1.89
1842889--1842934	24	1.9	24	82	8	58	28	10	23	36	1.89
1845972--1846047	27	2.9	27	84	9	95	1	23	0	75	0.89
1845965--1846046	33	2.4	34	84	11	98	1	21	0	76	0.85
1845986--1846041	15	3.8	14	74	19	51	0	25	0	75	0.81
1847171--1847472	74	4.1	72	75	9	181	38	14	24	22	1.92
1847245--1847516	72	3.6	72	75	8	206	40	14	24	21	1.90
1847242--1847507	37	7.2	36	70	11	139	39	14	23	22	1.91
1847245--1847454	72	2.9	72	77	4	208	37	15	24	22	1.93
1847117--1847472	147	2.4	146	75	9	330	36	14	25	23	1.93
1850072--1850934	155	5.5	155	81	4	856	37	21	18	22	1.94
1850081--1850944	158	5.5	153	80	5	825	37	21	18	22	1.94
1853016--1853422	167	2.4	167	84	4	518	51	7	13	27	1.68
1865303--1865766	232	2.0	231	95	0	829	29	18	15	36	1.92
1868052--1868109	7	8.3	7	78	14	66	1	17	0	81	0.78
1868665--1868702	20	1.9	20	89	10	60	2	5	13	78	1.02
1868794--1868826	4	8.2	4	87	12	50	0	24	0	75	0.80
1869820--1869878	19	2.8	20	78	14	66	16	15	3	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870133--1870168	4	9.0	4	93	0	63	0	22	0	77	0.76
1871412--1871465	20	2.7	20	91	5	83	37	18	12	31	1.89
1871488--1871550	19	3.3	18	85	12	90	33	17	14	34	1.90
1872389--1872446	21	2.5	24	72	16	59	36	10	5	48	1.60
1874489--1874547	20	3.0	20	75	9	75	55	3	10	30	1.49
1874683--1874721	17	2.3	17	100	0	78	41	0	10	48	1.37
1876201--1876553	79	4.5	79	78	4	336	37	12	22	28	1.91
1876201--1876553	159	2.2	158	81	6	385	37	12	22	28	1.91
1878060--1878552	249	2.0	249	91	0	790	41	16	18	24	1.90
1879640--1879664	6	4.2	6	100	0	50	16	0	0	84	0.63
1884114--1884183	22	3.2	22	67	23	58	37	10	10	42	1.72
1888469--1888495	2	13.5	2	100	0	54	51	0	48	0	1.00
1888979--1889029	26	2.0	25	92	3	84	54	0	0	45	0.99
1888978--1889037	26	2.4	25	78	8	70	58	0	0	41	0.98
1889637--1889679	10	3.7	11	77	22	52	39	0	0	60	0.97
1891113--1891176	18	3.8	17	76	15	53	40	1	0	57	1.08
1891135--1891176	17	2.4	17	81	14	50	42	2	0	54	1.13
1895191--1895310	52	2.3	50	81	5	141	29	13	15	42	1.84
1896769--1896839	32	2.2	32	92	0	115	33	11	18	36	1.86
1901990--1902032	19	2.2	19	88	12	61	2	0	9	88	0.60
1901990--1902033	16	2.7	16	89	3	61	2	0	11	86	0.66
1915365--1915400	8	4.5	8	100	0	72	11	0	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915418--1915464	12	4.2	11	81	10	51	0	21	0	78	0.75
1915426--1915467	21	2.0	21	86	9	59	0	16	0	83	0.65
1915418--1915465	11	4.2	11	84	7	60	0	20	0	79	0.74
1915428--1915466	12	3.3	12	82	17	55	0	15	0	84	0.62
1919573--1919603	13	2.4	13	94	0	53	35	12	16	35	1.87
1919556--1919619	33	1.9	33	87	12	96	32	18	12	35	1.89
1919586--1919746	64	2.5	64	93	3	272	31	18	17	32	1.94
1919715--1919767	19	2.6	21	76	11	56	33	20	13	32	1.91
1920371--1920410	15	2.5	16	84	8	55	35	30	2	32	1.71
1922265--1922303	13	3.0	13	96	0	69	35	15	17	30	1.91
1926623--1926669	24	1.9	25	91	4	78	6	19	19	55	1.64
1927039--1927063	13	1.9	13	100	0	50	36	16	16	32	1.90
1927019--1927088	33	2.1	33	89	0	104	34	11	14	40	1.82
1927129--1927153	13	1.9	13	100	0	50	32	16	16	36	1.90
1927164--1927286	52	2.4	52	94	0	210	37	18	16	27	1.92
1931040--1931076	18	2.1	18	100	0	74	35	10	21	32	1.88
1932076--1932106	13	2.4	13	94	0	53	35	12	16	35	1.87
1932056--1932219	33	5.0	33	67	19	112	33	17	14	35	1.89
1932056--1932282	97	2.4	97	93	0	393	32	16	15	35	1.90
1932246--1932303	19	2.9	21	82	10	75	31	15	15	37	1.89
1932290--1932315	13	2.0	13	100	0	52	38	15	15	30	1.88
1936662--1936734	6	12.2	6	77	0	65	39	2	9	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1936662--1936734	4	18.2	4	82	0	65	39	2	9	47	1.50
1937079--1937121	10	4.6	9	80	11	50	32	0	2	65	1.06
1938243--1938286	16	2.8	16	82	0	52	40	2	4	52	1.34
1939469--1939576	16	6.8	16	67	16	53	41	23	14	20	1.89
1939469--1939595	32	4.0	32	71	13	91	41	24	14	18	1.89
1939525--1939601	16	4.8	16	81	9	77	42	27	15	14	1.85
1940772--1940835	31	2.1	31	82	11	78	71	6	7	14	1.28
1943553--1943578	2	13.0	2	100	0	52	50	0	0	50	1.00
1944246--1944293	17	2.8	17	79	14	55	50	2	0	47	1.12
1945880--1945932	16	3.3	17	82	7	58	47	1	3	47	1.31
1948875--1948946	28	2.6	28	88	0	99	23	19	34	22	1.96
1948791--1949031	108	2.2	108	83	3	299	29	16	28	25	1.97
1948907--1949084	80	2.2	80	88	2	275	29	14	28	28	1.95
1949015--1949145	51	2.5	51	82	9	165	32	11	25	30	1.91
1951903--1952800	55	16.3	55	92	3	1390	21	20	29	28	1.98
1952147--1952232	29	3.1	29	65	21	83	18	19	32	29	1.96
1952503--1952585	27	3.0	27	60	16	62	21	19	30	28	1.98
1952610--1952750	27	5.1	27	59	16	65	22	19	29	28	1.98
1953793--1953840	1	48.0	1	80	0	51	0	4	6	89	0.58
1953788--1953840	19	2.7	20	85	2	72	0	5	7	86	0.69
1953789--1953841	17	3.2	16	84	10	63	0	3	9	86	0.68
1956790--1956872	1	83.0	1	85	0	112	2	0	92	4	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1956790--1956875	23	3.6	23	90	6	127	2	0	91	5	0.48
1956790--1956872	25	3.4	24	90	6	130	2	0	92	4	0.44
1956790--1956882	26	3.7	25	90	5	134	2	0	89	8	0.57
1956959--1957051	18	5.6	17	67	23	56	1	0	55	43	1.06
1957015--1957048	18	1.9	18	94	5	61	0	0	61	38	0.96
1957015--1957060	18	2.6	18	86	10	51	0	0	63	36	0.95
1957138--1957181	21	2.2	20	84	8	54	4	0	65	29	1.12
1957080--1957179	47	2.3	43	75	18	98	3	0	70	27	1.02
1957071--1957193	18	6.7	18	69	15	72	2	0	69	27	1.00
1957122--1957209	38	2.3	36	79	11	88	2	0	65	31	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!