Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold165
Parameters: 2 7 7 80 10 50 1000
Length:  1947055

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1218 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920873--1920942
12
5.6
12
73
17
54
45
0
0
54
0.99
1920886--1921028
20
7.2
21
67
27
57
49
0
0
50
1.00
1920922--1921004
15
5.3
15
72
18
53
53
0
0
46
1.00
1920874--1921042
90
1.9
91
80
8
202
49
0
0
50
1.05
1922275--1922339
15
4.2
15
75
19
53
20
3
1
75
1.02
1922274--1922339
8
8.1
8
74
15
55
21
3
1
74
1.04
1934356--1934417
32
1.9
33
90
3
99
45
16
11
27
1.81
1936616--1936665
21
2.3
21
80
10
57
56
4
18
22
1.58
1938463--1938493
15
2.1
15
93
0
53
48
16
22
12
1.80
1940569--1940593
13
1.9
13
100
0
50
32
20
16
32
1.94
1940710--1940749
22
2.0
20
85
14
55
25
20
5
50
1.68
1942360--1942403
20
2.3
19
88
11
63
40
2
11
45
1.53
1942369--1942409
20
2.0
20
95
0
73
43
0
7
48
1.30
1943130--1943191
32
1.9
33
90
3
99
45
16
11
27
1.81
1946087--1946305
78
2.8
75
77
10
219
36
10
23
30
1.87
1946087--1946379
77
3.8
75
77
11
238
35
9
23
30
1.88
1946368--1946437
28
2.5
28
90
0
104
20
17
31
31
1.95
1946293--1946514
103
2.2
103
85
4
288
28
12
27
31
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!