genome.fa.s165.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold165
Parameters: 2 7 7 80 10 50 1000
Length:  1947055

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1218 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224008--1224048	20	2.2	19	86	8	57	36	9	17	36	1.82
1224072--1224124	20	2.7	20	88	5	72	33	13	18	33	1.90
1229240--1229375	47	2.9	47	83	0	155	17	19	31	30	1.95
1230103--1230133	9	3.4	9	90	0	53	12	6	0	80	0.89
1230615--1231379	42	18.1	43	79	4	660	36	16	29	16	1.92
1230645--1231142	85	5.8	87	80	4	264	36	17	29	16	1.92
1238855--1238899	22	2.0	23	82	4	56	44	2	20	33	1.63
1241023--1242165	43	26.9	43	73	6	549	20	27	19	32	1.97
1241071--1242151	85	12.7	83	74	5	560	20	27	19	32	1.97
1241024--1242019	128	7.8	128	73	5	473	20	27	19	32	1.97
1241812--1242096	42	6.7	42	77	4	151	19	25	20	34	1.96
1243521--1243879	165	2.3	154	80	9	404	27	13	8	51	1.68
1243658--1243939	150	1.9	150	81	7	340	28	13	8	49	1.72
1244430--1244463	14	2.4	14	90	9	52	35	0	0	64	0.94
1245768--1245808	21	2.0	21	85	9	57	39	12	9	39	1.76
1245845--1245900	20	2.8	20	81	7	69	42	17	12	26	1.85
1245888--1246024	53	2.6	53	95	1	238	37	18	16	27	1.92
1246048--1246110	10	6.1	10	72	7	54	25	26	7	39	1.83
1246056--1246122	32	2.1	32	94	0	116	28	25	8	37	1.86
1247324--1248435	311	3.6	307	82	3	1230	22	18	20	39	1.93
1247324--1248493	155	7.5	154	77	7	999	22	17	20	39	1.93
1254454--1254537	13	5.5	13	71	28	60	34	19	13	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1254462--1254556	19	5.6	19	71	27	97	34	20	12	32	1.90
1254454--1254620	32	5.2	32	94	0	280	34	19	13	33	1.90
1255956--1255981	8	3.2	8	100	0	52	50	23	15	11	1.76
1258173--1258324	52	2.9	52	82	1	171	36	17	20	25	1.94
1258394--1258584	32	6.0	32	84	5	235	22	16	32	28	1.95
1258394--1258642	96	2.6	96	80	12	266	23	15	32	27	1.95
1258391--1258643	64	4.0	63	78	9	241	23	16	32	27	1.96
1258431--1258726	32	9.7	30	79	10	169	26	14	32	26	1.95
1258572--1258965	29	13.4	29	78	5	321	33	12	30	24	1.92
1258616--1258924	57	5.3	57	77	3	278	33	11	30	24	1.90
1258578--1258994	114	3.6	116	78	6	290	33	12	29	24	1.92
1259995--1260441	154	2.9	155	80	6	478	39	22	14	23	1.91
1260044--1260461	155	2.7	154	79	6	452	39	21	15	23	1.92
1260044--1260502	154	3.0	154	77	7	448	39	20	15	24	1.92
1261965--1262005	21	2.0	21	85	9	57	39	12	9	39	1.76
1262085--1262221	53	2.6	53	94	1	229	37	16	17	28	1.92
1262263--1262323	21	2.8	22	92	5	106	26	26	11	36	1.90
1262366--1262391	13	2.0	13	100	0	52	30	15	15	38	1.88
1268071--1268277	79	2.6	79	81	3	229	29	16	28	25	1.97
1268232--1268305	28	2.6	28	84	0	85	24	17	32	25	1.97
1268289--1268458	52	3.3	52	77	9	177	32	12	25	29	1.93
1268261--1268598	184	1.8	182	89	4	527	33	12	24	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1268341--1268587	132	1.9	131	81	5	302	34	12	24	28	1.92
1268473--1268593	51	2.3	52	87	4	165	34	10	22	32	1.89
1270962--1270987	13	2.0	13	100	0	52	38	15	15	30	1.88
1271027--1271094	19	3.9	18	76	23	83	38	14	11	35	1.83
1271049--1271073	13	1.9	13	100	0	50	32	16	16	36	1.90
1271030--1271092	32	2.0	32	96	0	117	36	15	12	34	1.86
1278240--1278918	61	11.0	61	76	5	541	25	24	18	31	1.97
1280386--1280410	8	3.1	8	100	0	50	24	28	12	36	1.91
1282002--1282221	79	2.8	79	78	5	214	29	25	10	34	1.89
1282053--1282247	79	2.5	78	78	3	210	29	26	10	33	1.90
1282236--1282383	78	1.9	78	87	2	217	27	21	12	38	1.90
1282126--1282354	106	2.1	107	80	6	268	27	24	13	33	1.93
1282100--1282571	185	2.6	183	84	4	574	27	23	11	36	1.90
1282420--1282913	79	6.3	79	76	6	229	28	23	12	36	1.91
1282499--1282930	157	2.7	158	77	6	430	27	23	13	35	1.92
1282797--1282961	79	2.1	79	81	4	199	26	24	12	36	1.90
1285001--1285030	4	7.5	4	92	0	51	23	3	0	73	0.98
1290846--1291010	27	5.2	32	71	25	122	20	29	5	44	1.74
1290890--1291006	27	4.1	27	77	18	128	19	29	5	45	1.74
1290854--1291012	61	2.6	61	90	4	241	20	30	5	44	1.74
1291639--1291770	42	3.2	41	80	8	151	37	12	31	18	1.89
1291753--1291937	100	1.9	100	87	2	273	27	19	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291851--1292042	55	3.4	55	88	8	280	21	21	29	27	1.99
1291753--1293529	210	8.4	207	73	17	1055	24	19	30	25	1.98
1292062--1292305	55	4.3	55	79	11	251	23	20	27	27	1.99
1292110--1292229	61	2.0	62	89	1	188	27	20	26	25	1.99
1291853--1292495	265	2.4	267	88	5	961	23	19	30	26	1.98
1292383--1292526	54	2.6	54	87	6	207	20	19	32	27	1.97
1292543--1292652	55	2.0	55	91	3	177	22	20	28	28	1.99
1292390--1292841	155	2.9	154	87	3	638	24	18	30	26	1.98
1292597--1292781	100	1.9	100	87	2	273	25	17	30	26	1.97
1292695--1292950	119	2.2	120	86	8	368	23	20	28	27	1.99
1292695--1292954	60	4.4	59	87	5	352	23	20	29	26	1.99
1292326--1293323	428	2.3	429	91	3	1595	24	19	30	25	1.98
1292877--1293049	94	1.8	94	87	4	260	22	20	30	26	1.98
1292970--1293076	55	1.9	55	90	3	171	24	21	26	28	1.99
1292816--1293269	155	2.9	152	86	8	607	24	19	30	25	1.98
1293025--1293209	100	1.9	100	90	2	300	25	18	30	24	1.98
1293124--1293298	60	2.9	60	91	2	280	24	20	29	25	1.99
1292543--1293529	214	4.6	208	77	15	911	24	19	29	25	1.98
1293339--1293557	116	1.9	116	87	4	325	22	20	28	28	1.98
1293339--1293584	55	4.4	55	81	11	291	22	20	28	28	1.99
1293125--1294013	265	3.3	263	90	3	1323	23	19	30	25	1.98
1293602--1293858	54	4.5	56	84	11	326	21	20	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1292543--1294201	904	1.8	904	91	3	2771	24	19	30	25	1.98
1293876--1293980	55	1.9	55	94	3	185	23	20	26	28	1.99
1293723--1294173	155	2.9	154	90	3	681	23	19	31	25	1.98
1293933--1294113	100	1.8	100	91	2	301	25	17	31	24	1.97
1294027--1294286	60	4.4	60	91	4	392	23	20	30	25	1.99
1294027--1294261	119	2.0	120	93	3	402	23	20	30	25	1.99
1294209--1294381	94	1.8	94	87	4	260	22	20	29	27	1.98
1293454--1294568	428	2.6	425	90	4	1726	24	19	30	26	1.98
1294300--1294408	55	2.0	55	90	3	175	22	20	25	31	1.98
1294150--1294690	154	3.6	153	85	9	766	24	19	29	26	1.98
1300824--1301369	79	6.9	79	94	0	896	32	15	26	26	1.95
1301297--1301417	53	2.3	51	86	10	158	29	14	27	28	1.96
1303720--1303953	30	7.7	30	83	1	243	25	30	15	29	1.96
1303720--1304053	61	5.4	60	76	7	283	25	28	15	30	1.96
1303772--1303951	91	2.0	90	86	1	252	25	31	15	27	1.96
1303727--1303956	121	1.9	121	85	1	318	25	29	16	28	1.96
1303891--1304024	69	2.0	68	84	1	178	25	27	16	30	1.97
1304705--1305189	166	2.9	164	82	4	539	28	11	8	51	1.68
1306999--1307084	34	2.5	34	100	0	172	38	9	20	31	1.85
1307082--1307142	21	2.8	22	92	5	106	36	11	26	26	1.90
1307184--1307320	53	2.6	53	94	1	238	27	17	17	37	1.92
1307290--1307360	20	3.5	20	77	11	74	29	14	16	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307400--1307440	21	2.0	21	85	9	57	39	9	12	39	1.76
1312819--1312921	36	3.2	36	60	28	84	26	25	19	29	1.99
1313181--1313263	27	3.0	27	61	22	64	28	27	19	24	1.98
1313522--1313606	27	3.1	27	61	15	66	28	29	18	23	1.98
1312816--1313783	55	17.3	55	90	5	1387	28	29	19	22	1.98
1316615--1316749	68	2.0	68	95	0	243	22	25	15	35	1.94
1317375--1317442	19	3.9	19	78	21	85	35	11	14	38	1.83
1317377--1317439	32	2.0	32	96	0	117	34	12	15	36	1.86
1317396--1317420	13	1.9	13	100	0	50	36	16	16	32	1.90
1317482--1317507	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11