genome.fa.s165.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold165
Parameters: 2 7 7 80 10 50 1000
Length:  1947055

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1218 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417892--418691	399	2.0	395	89	1	1244	36	14	18	31	1.90
418287--465534	477	99.3	477	90	1	69002	35	15	19	30	1.92
418287--465534	952	49.6	953	91	1	69148	35	15	19	30	1.92
419720--465111	159	286.1	160	62	14	2584	35	15	19	30	1.92
432049--432710	158	4.2	158	67	13	383	35	15	18	30	1.92
465928--465953	13	2.0	13	100	0	52	38	15	15	30	1.88
468086--468110	13	1.9	13	100	0	50	32	16	16	36	1.90
468200--468225	13	2.0	13	100	0	52	38	15	15	30	1.88
469013--469075	21	3.5	19	72	28	66	44	14	12	28	1.82
469031--469056	13	2.0	13	100	0	52	38	15	15	30	1.88
469013--469075	34	1.9	33	93	6	110	44	14	12	28	1.82
471277--471326	21	2.3	21	80	10	57	56	4	18	22	1.58
473118--473148	15	2.1	15	93	0	53	48	16	22	12	1.80
475226--475263	13	2.9	13	92	0	58	36	18	13	31	1.89
476792--476834	23	2.0	21	81	9	50	13	9	16	60	1.58
477713--477738	13	2.0	13	100	0	52	38	15	15	30	1.88
477695--477759	32	2.0	32	87	6	94	43	15	13	27	1.85
478503--485563	476	14.8	476	88	1	9927	35	14	18	31	1.91
478503--485563	951	7.4	952	88	1	9906	35	14	18	31	1.91
485566--497573	476	25.3	474	89	1	16749	35	15	18	30	1.92
497322--497826	255	2.0	255	89	1	780	33	13	21	31	1.92
496847--498304	731	2.0	731	90	1	2298	34	14	19	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497577--532061	476	72.1	475	83	5	27907	35	14	18	31	1.91
503760--504264	255	2.0	255	89	1	780	33	13	21	31	1.92
503289--504742	731	2.0	726	90	2	2272	34	14	20	30	1.92
508860--509723	433	2.0	433	88	0	1291	36	15	17	30	1.91
533687--533762	12	5.9	12	75	24	75	40	0	46	13	1.43
533687--533762	24	3.5	24	72	23	94	40	0	46	13	1.43
533708--533767	9	7.1	9	70	14	56	43	0	43	13	1.43
533689--533795	41	2.6	42	92	1	171	42	0	43	12	1.48
541421--541460	13	3.1	13	85	0	53	35	12	12	40	1.81
541590--541630	21	2.0	22	85	9	59	31	24	0	43	1.54
543957--544014	19	3.1	18	85	11	80	36	15	15	32	1.89
543958--544013	20	2.8	20	89	7	80	33	16	16	33	1.91
543975--544349	168	2.2	168	95	0	671	34	15	16	34	1.90
545877--546191	28	11.4	28	80	7	297	30	31	16	21	1.95
545877--546512	56	10.9	56	72	13	313	31	30	15	22	1.95
546081--546125	21	2.1	21	100	0	90	28	35	13	22	1.92
546025--546242	73	2.9	77	81	8	216	32	33	14	20	1.92
546144--546234	45	2.1	43	81	4	101	30	38	12	18	1.87
546116--546263	73	2.0	73	93	0	251	32	36	12	18	1.88
546189--546510	28	10.9	28	74	10	212	31	31	14	22	1.94
546222--546535	62	5.2	62	83	6	314	31	29	14	23	1.95
546319--546574	32	8.2	32	71	13	169	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550726--550759	6	6.0	6	86	13	54	85	14	0	0	0.60
550726--550759	11	3.0	11	91	4	50	85	14	0	0	0.60
552061--552614	28	20.4	28	75	7	480	30	28	16	24	1.97
552060--552804	56	13.8	56	75	12	569	30	28	16	25	1.97
552060--552757	84	8.7	81	74	15	513	29	27	16	25	1.97
552274--552314	20	2.0	20	86	9	57	26	24	19	29	1.98
552244--552342	48	2.1	48	82	3	119	27	27	20	25	1.99
552216--552366	76	2.0	76	90	2	241	27	29	18	24	1.98
552060--552558	132	3.7	131	81	6	513	29	28	16	24	1.97
552569--552657	44	2.0	44	86	0	124	30	24	15	29	1.96
552623--552818	28	6.8	28	75	8	137	30	27	16	25	1.97
552495--552740	126	1.9	128	86	4	347	31	25	15	27	1.96
552771--552853	31	2.7	31	76	0	103	26	31	25	16	1.97
555942--555998	21	2.8	20	81	5	69	40	15	14	29	1.87
556040--556070	10	3.1	10	90	0	53	22	29	6	41	1.78
556058--556113	21	2.6	22	94	5	105	26	25	10	37	1.88
556184--556209	13	2.0	13	100	0	52	30	15	15	38	1.88
556659--556725	37	1.9	35	88	11	102	32	11	25	29	1.92
557264--557371	51	2.1	51	94	3	191	25	15	16	42	1.88
573209--573259	19	2.7	19	96	0	93	31	11	17	39	1.86
573311--573335	13	1.9	13	100	0	50	32	16	16	36	1.90
573344--573472	52	2.5	52	96	0	240	35	18	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585156--585244	32	2.8	32	75	11	92	26	16	26	29	1.97
585274--586097	28	29.5	27	73	9	348	24	17	29	28	1.97
585274--586093	56	14.7	56	77	6	599	24	17	29	28	1.97
585274--586093	169	4.9	169	78	6	731	24	17	29	28	1.97
585883--585987	53	2.0	53	84	0	138	27	17	27	27	1.97
585779--586097	164	1.9	166	81	5	387	25	16	28	28	1.97
610152--610182	15	2.1	15	93	0	53	12	22	16	48	1.80
611984--612028	21	2.1	21	84	8	56	22	20	4	53	1.63
614244--614269	13	2.0	13	100	0	52	30	15	15	38	1.88
614648--614699	20	2.6	20	84	6	61	38	15	11	34	1.83
618431--618599	52	3.3	51	85	4	207	44	13	10	30	1.78
618657--618709	20	2.6	21	93	3	90	32	18	9	39	1.83
620209--620291	41	2.0	41	100	0	166	21	13	21	43	1.87
621080--621131	13	4.5	13	73	26	62	36	0	5	57	1.23
621078--621119	20	2.1	20	95	0	75	33	0	9	57	1.31
623596--624009	155	2.7	155	82	3	494	24	16	18	41	1.90
626381--626406	13	2.0	13	100	0	52	30	15	15	38	1.88
626361--626424	33	2.0	32	87	9	94	28	14	17	40	1.88
628928--628965	13	2.9	13	96	0	67	34	15	18	31	1.92
635101--635126	13	2.0	13	100	0	52	30	15	15	38	1.88
635081--635144	33	2.0	32	87	9	94	28	14	17	40	1.88
635442--635488	23	2.0	24	84	8	62	36	8	8	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636006--636123	59	2.0	60	85	5	159	27	16	14	42	1.86
637782--637819	19	2.0	19	100	0	76	42	10	26	21	1.85
638231--638416	93	2.0	93	96	0	345	29	6	20	43	1.77
638580--638610	2	15.5	2	93	0	53	51	0	3	45	1.17
639047--639097	20	2.5	20	90	6	77	43	17	21	17	1.88
647730--647756	13	2.1	13	100	0	54	37	14	7	40	1.74
652781--653370	166	3.6	164	73	10	411	31	10	8	49	1.67
656552--656766	107	2.0	107	98	0	412	43	20	16	19	1.88
658573--658598	13	2.0	13	100	0	52	30	15	15	38	1.88
658553--658616	32	2.0	33	90	3	103	28	14	18	39	1.90
658553--658623	19	4.0	18	72	25	62	26	12	21	39	1.89
661141--661166	13	2.0	13	100	0	52	38	15	15	30	1.88
663245--663275	15	2.1	15	93	0	53	12	22	16	48	1.80
665069--665113	21	2.1	21	84	8	56	22	20	4	53	1.63
667332--667357	13	2.0	13	100	0	52	30	15	15	38	1.88
670713--671098	153	2.6	152	80	5	381	26	16	16	39	1.90
671448--671895	158	2.9	155	77	7	471	28	17	17	37	1.92
675408--675481	20	3.8	20	75	8	80	43	16	9	31	1.79
676465--676567	52	2.0	52	88	3	154	33	13	26	27	1.94
676537--676960	49	8.5	49	72	13	262	33	16	24	25	1.96
676641--676823	101	1.8	101	85	0	258	33	16	25	24	1.96
676800--676881	43	1.9	43	87	0	119	31	17	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676982--677353	63	5.9	62	84	4	392	20	18	31	30	1.96
676990--677363	96	3.9	93	82	6	405	20	17	32	30	1.95
676982--677353	159	2.4	158	88	0	566	20	18	31	30	1.96
677617--677871	61	4.1	60	79	9	269	36	13	28	21	1.91
677651--677702	26	2.0	26	88	0	77	32	17	25	25	1.97
677549--677936	128	3.0	127	82	5	444	37	13	28	20	1.90
677778--677831	27	2.0	27	88	0	81	35	14	27	22	1.93
677516--678045	34	16.3	32	73	11	298	38	13	28	20	1.90
677840--678039	65	3.1	65	82	2	233	38	13	31	18	1.88
677998--678076	33	2.5	32	80	13	92	35	17	30	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11