Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1594 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1982354--1982380
3
9.0
3
100
0
54
66
0
0
33
0.92
1983233--1983263
11
2.9
11
95
4
55
74
0
0
25
0.82
1983377--1983405
15
1.9
15
100
0
58
0
20
10
68
1.18
1983412--1983445
3
11.3
3
87
0
50
32
29
2
35
1.73
1984170--1984244
26
2.9
26
92
4
116
41
1
12
45
1.49
1984319--1984370
25
2.1
25
100
0
104
23
0
13
63
1.29
1989951--1990033
36
2.4
34
83
4
94
50
2
2
44
1.28
1990038--1990074
18
2.2
17
90
9
58
64
0
0
35
0.94
1990035--1990074
15
2.4
17
88
12
57
62
0
0
37
0.95
1991060--1991103
2
22.0
2
100
0
88
50
0
50
0
1.00
1997715--1997739
2
12.5
2
100
0
50
52
0
0
48
1.00
1998087--1998114
2
14.0
2
100
0
56
50
0
0
50
1.00
2000231--2000262
2
16.0
2
100
0
64
50
0
0
50
1.00
2000636--2000668
2
16.5
2
93
0
57
0
51
0
48
1.00
2001227--2001251
3
8.3
3
100
0
50
32
0
0
68
0.90
2003005--2003037
14
2.4
14
94
0
57
45
6
12
36
1.66
2013694--2013726
3
11.0
3
100
0
66
66
0
0
33
0.92
2014686--2014710
2
12.5
2
100
0
50
48
0
0
52
1.00
2015145--2015173
2
14.5
2
100
0
58
51
0
0
48
1.00
2016776--2016822
25
2.0
23
83
8
58
48
0
0
51
1.00
2016756--2016838
35
2.3
39
82
14
97
50
1
0
48
1.08
2016825--2016867
20
2.1
21
86
4
61
62
6
0
30
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2016820--2016869
20
2.5
20
78
15
59
58
6
0
36
1.23
2020382--2020439
29
2.0
29
89
0
89
46
0
0
53
1.00
2023364--2023393
10
3.0
10
95
0
51
36
30
10
23
1.87
2031844--2031882
20
1.9
21
89
5
62
33
0
0
66
0.92
2032252--2032288
2
18.5
2
100
0
74
48
0
0
51
1.00
2033119--2033149
6
5.2
6
100
0
62
0
0
16
83
0.64
2034900--2034926
14
1.9
14
100
0
54
66
7
0
25
1.17
2034945--2035020
17
4.4
18
76
14
72
55
0
0
44
0.99
2034922--2035023
27
3.9
27
76
13
97
54
0
0
45
0.99
2036298--2036338
5
8.4
5
82
15
50
43
0
2
53
1.13
2042235--2042262
3
9.3
3
100
0
56
32
0
0
67
0.91
2051919--2051962
2
22.0
2
95
0
79
47
0
0
52
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!