genome.fa.s230.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577201--577265	32	2.1	30	83	11	78	44	0	0	55	0.99
577208--577251	16	2.7	17	79	10	56	43	0	0	56	0.99
577227--577316	21	4.0	23	75	17	73	43	0	0	56	0.99
577244--577316	26	3.0	26	68	27	70	42	0	0	57	0.98
577503--577561	25	2.3	26	77	8	68	49	1	0	49	1.11
577978--578033	18	3.2	17	78	9	67	51	0	0	48	1.00
577994--578070	21	3.8	19	71	20	59	49	0	0	50	1.00
578027--578062	18	2.0	18	94	0	63	47	0	0	52	1.00
578028--578073	18	2.6	18	82	6	58	47	0	0	52	1.00
578352--578385	16	2.0	18	88	11	54	58	2	0	38	1.13
578336--578413	15	5.4	14	73	18	61	56	1	0	42	1.07
578517--578551	7	5.0	7	100	0	70	28	14	28	28	1.95
580332--580366	2	17.5	2	93	0	61	54	0	0	45	0.99
581880--582003	24	5.3	23	74	14	103	50	0	2	45	1.20
581853--582009	71	2.2	70	92	2	262	49	0	3	46	1.22
581853--582017	70	2.3	71	84	11	230	49	0	3	47	1.21
582542--582583	14	3.1	14	87	12	54	59	0	0	40	0.97
582583--582628	23	2.0	23	87	8	67	54	0	0	45	0.99
582538--582618	44	1.9	42	82	12	103	55	0	0	44	0.99
582611--582652	21	2.0	22	90	4	68	66	0	0	33	0.92
587841--587878	16	2.4	17	82	13	53	60	0	0	39	0.97
587882--587929	15	3.1	15	76	8	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588723--588748	2	13.0	2	100	0	52	0	0	50	50	1.00
589086--589138	28	1.9	27	85	11	72	62	0	0	37	0.96
589103--589151	16	3.0	16	82	11	55	63	0	0	36	0.95
589089--589150	9	6.8	9	72	17	56	64	0	0	35	0.94
589412--589447	17	2.1	18	90	10	58	47	0	0	52	1.00
591371--591406	15	2.4	15	90	0	54	52	0	0	47	1.00
592126--592165	19	2.0	20	85	4	55	65	0	0	35	0.93
592121--592166	19	2.5	19	76	16	51	63	0	0	36	0.95
592336--592388	22	2.4	22	96	0	97	41	16	15	26	1.88
594636--594703	19	3.7	18	73	13	59	55	0	0	44	0.99
594667--594703	18	2.1	18	89	0	56	56	0	0	43	0.99
594999--595057	21	3.1	20	72	22	56	52	0	5	42	1.23
594951--595025	14	5.3	14	71	24	59	53	0	4	42	1.19
594963--595045	21	4.7	18	72	21	77	54	0	2	43	1.13
595027--595112	29	2.8	30	79	15	88	59	1	1	38	1.13
595018--595179	28	5.6	28	65	21	84	56	1	1	41	1.15
595637--595687	20	2.6	19	75	24	52	33	0	0	66	0.92
595637--595697	21	3.0	21	85	7	81	34	0	0	65	0.93
596542--596590	25	2.0	25	85	14	68	32	0	2	65	1.04
596761--596807	25	2.0	23	87	8	67	51	2	0	46	1.13
596788--596820	16	2.1	16	88	11	50	57	3	0	39	1.14
599635--599727	39	2.4	39	92	0	168	31	13	9	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601824--601875	24	2.1	26	82	13	65	63	3	0	32	1.12
620318--620345	2	14.0	2	100	0	56	50	0	0	50	1.00
620473--620513	2	20.5	2	84	0	55	58	0	0	41	0.98
620473--620514	14	3.0	14	92	0	66	59	0	0	40	0.97
620473--620514	18	2.3	18	95	0	75	59	0	0	40	0.97
624862--624916	22	2.5	22	85	2	76	40	0	0	60	0.97
625561--625613	16	3.1	16	75	8	52	37	0	0	62	0.96
625601--625640	21	1.9	21	85	10	55	62	0	0	37	0.95
626211--626263	16	3.2	16	81	2	52	54	1	3	39	1.29
627314--627388	32	2.2	34	76	11	82	49	0	1	49	1.09
627329--627392	32	2.0	33	87	3	94	53	0	0	46	1.00
629142--629219	23	3.3	23	80	8	86	55	0	2	42	1.13
629323--629362	17	2.4	17	86	0	53	57	0	2	40	1.12
629377--629427	26	2.0	26	88	7	77	43	0	0	56	0.99
630983--631026	22	1.9	23	81	9	54	54	0	2	43	1.12
630962--631540	104	5.6	102	76	11	499	44	4	4	46	1.44
634503--634544	22	1.9	22	85	0	57	59	7	0	33	1.25
634864--634906	2	22.0	2	95	4	79	48	0	0	51	1.00
635027--635084	17	3.4	17	75	13	57	37	0	0	62	0.96
635050--635114	25	2.4	29	80	14	70	43	0	0	56	0.99
635043--635142	20	5.1	20	70	20	59	40	1	0	59	1.04
635072--635118	25	1.9	25	91	4	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635375--635415	3	13.7	3	94	0	73	63	0	2	34	1.08
636042--636080	20	1.9	21	94	5	71	46	0	0	53	1.00
636298--636331	17	2.0	17	100	0	68	52	17	0	29	1.45
636299--636339	17	2.4	17	91	0	64	53	14	0	31	1.41
636632--636661	2	15.0	2	92	0	51	0	53	0	46	1.00
637934--637964	2	15.5	2	100	0	62	51	0	48	0	1.00
639201--639254	27	1.9	29	85	14	78	53	0	0	46	1.00
639730--639774	25	1.9	22	86	13	63	51	0	0	48	1.00
640254--640308	19	2.9	20	78	10	62	63	5	1	29	1.27
640757--640807	19	2.8	18	80	11	59	58	0	0	41	0.98
645842--645870	11	2.7	11	94	5	51	89	0	0	10	0.48
646089--646181	19	4.9	18	68	13	62	59	0	0	40	0.98
647924--647984	30	2.0	30	84	6	79	67	0	0	32	0.91
647928--647992	5	13.8	5	72	15	50	64	0	0	35	0.94
648327--648376	17	2.7	19	81	15	68	50	0	0	50	1.00
648327--648393	17	3.9	18	74	20	63	49	0	0	50	1.00
648367--648424	24	2.4	23	85	5	80	39	0	0	60	0.97
648325--648403	39	2.0	42	87	7	119	48	0	0	51	1.00
649137--649258	54	2.3	53	98	0	208	45	0	1	51	1.16
649154--649245	27	3.4	28	74	6	107	46	0	1	52	1.07
649233--649281	15	3.2	16	75	13	50	38	2	0	59	1.09
650016--650083	23	2.9	23	78	10	75	55	10	1	32	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650026--650083	23	2.5	23	85	2	80	60	6	1	31	1.33
650570--650609	4	10.0	4	94	0	71	0	22	0	77	0.77
650792--650848	26	2.1	27	84	9	73	50	0	0	49	1.00
652761--652833	23	3.1	24	82	9	80	43	0	1	54	1.08
652858--652907	21	2.4	20	81	15	57	48	0	0	52	1.00
653081--653132	10	5.3	10	79	11	54	36	0	1	61	1.07
653689--653739	15	3.3	15	81	13	59	50	1	0	47	1.12
653811--653868	20	2.9	20	78	16	66	53	0	0	46	1.00
657185--657279	10	9.3	10	73	19	72	64	4	2	29	1.24
657694--657719	9	2.9	9	100	0	52	65	0	0	34	0.93
658555--658589	3	11.3	3	93	6	61	62	0	2	34	1.10
664160--664198	17	2.3	17	82	8	53	56	2	0	41	1.13
664220--664258	20	2.0	20	84	0	51	61	5	0	33	1.18
667090--667167	6	13.0	6	86	0	102	42	2	2	52	1.28
667090--667167	10	7.8	10	86	0	102	42	2	2	52	1.28
667090--667167	32	2.4	32	97	0	147	42	2	2	52	1.28
667480--667555	36	2.1	36	95	0	134	31	7	25	35	1.84
667621--667739	30	4.0	30	89	0	184	36	17	26	20	1.94
667705--667828	61	2.0	61	92	0	203	35	14	20	29	1.92
667999--668058	32	1.9	32	86	10	88	35	8	20	36	1.82
675404--675433	2	15.0	2	100	0	60	50	0	0	50	1.00
676952--677000	21	2.2	22	89	7	73	63	2	2	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676915--677096	99	1.8	99	89	2	285	52	3	3	40	1.36
677053--677096	11	4.1	11	88	5	63	63	2	0	34	1.07
677053--677096	16	2.7	17	82	10	56	63	2	0	34	1.07
677824--677902	33	2.4	34	77	16	85	48	0	0	51	1.00
677837--677915	29	2.5	33	79	18	82	48	0	0	51	1.00
682584--682610	2	13.5	2	100	0	54	51	0	0	48	1.00
682802--682841	15	2.8	14	85	7	53	50	0	10	40	1.36
683014--683100	35	2.4	37	78	7	106	28	8	20	42	1.80
683061--683103	22	2.0	22	86	9	61	30	9	18	41	1.82
683202--683264	30	2.1	29	85	11	83	63	0	1	34	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14