genome.fa.s230.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87144--87183	20	2.0	20	85	9	55	27	0	0	72	0.85
87954--87980	2	13.5	2	100	0	54	48	0	0	51	1.00
88612--88646	2	17.5	2	100	0	70	0	48	0	51	1.00
89016--89050	14	2.3	16	85	14	56	57	0	0	42	0.99
93611--93749	8	17.4	8	67	24	62	56	0	0	42	1.04
93603--93670	14	4.4	15	77	19	61	61	0	0	38	0.96
93930--93978	2	24.5	2	100	0	98	48	0	0	51	1.00
94176--94218	18	2.4	16	79	20	50	48	0	0	51	1.00
94188--94223	18	1.9	18	94	5	63	50	0	0	50	1.00
94165--94222	23	2.7	22	76	7	57	50	0	0	50	1.00
94806--94850	18	2.6	17	86	6	56	33	2	0	64	1.06
95297--95335	19	2.0	20	85	5	53	51	2	2	43	1.29
95522--95578	18	3.2	18	83	9	73	56	0	5	38	1.22
95546--95583	17	2.2	18	90	4	60	55	2	10	31	1.48
96397--96434	14	2.7	14	88	8	51	26	0	2	71	1.00
96387--96434	19	2.5	19	83	13	62	29	0	2	68	1.01
99451--99475	2	12.5	2	100	0	50	48	0	0	52	1.00
100175--100212	19	2.0	20	89	5	60	18	7	10	63	1.50
103818--103843	2	13.0	2	100	0	52	50	0	0	50	1.00
104153--104222	22	3.2	21	76	19	63	60	0	2	37	1.12
104153--104214	30	2.0	31	87	3	90	59	0	1	38	1.07
114750--114792	2	21.5	2	92	0	68	2	46	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115926--115966	2	20.5	2	94	0	73	0	51	2	46	1.14
124304--124398	27	3.5	27	76	9	95	44	1	1	53	1.14
132138--132189	19	2.5	21	81	9	63	57	1	0	40	1.10
132645--132699	29	1.9	28	85	10	76	45	1	0	52	1.11
132643--132699	14	3.9	15	75	20	59	45	1	0	52	1.11
133420--133470	5	10.4	5	79	10	52	35	0	0	64	0.94
133411--133516	32	3.3	33	79	14	107	40	0	0	59	0.97
135422--135469	5	9.2	5	78	17	53	39	0	2	58	1.10
135436--135486	21	2.4	22	81	15	70	39	0	0	60	0.97
135419--135486	27	2.6	27	76	21	72	38	0	1	60	1.06
135488--135566	31	2.7	28	80	7	86	50	0	0	49	1.00
135841--135878	3	12.7	3	100	0	76	65	0	0	34	0.93
139040--139096	16	3.4	16	72	13	53	42	0	1	56	1.10
139040--139096	18	3.4	17	73	17	57	42	0	1	56	1.10
139048--139100	24	2.1	26	86	10	74	37	0	3	58	1.16
139876--139919	22	1.9	23	90	9	72	45	0	0	54	0.99
139887--139923	13	3.0	13	80	15	51	45	0	0	54	1.00
140294--140335	16	2.5	18	85	14	63	57	0	0	42	0.99
140294--140345	17	3.2	17	86	10	65	53	0	0	46	1.00
140253--140346	17	5.6	17	71	18	63	50	0	1	48	1.07
140510--140595	43	1.9	46	84	11	117	46	3	5	44	1.44
140883--140941	2	30.0	2	86	3	84	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142063--142109	2	24.0	2	91	4	78	51	2	0	46	1.13
142380--142413	4	8.5	4	100	0	68	26	23	26	23	2.00
143395--143431	18	2.1	18	100	0	74	40	5	10	43	1.63
144395--144438	2	22.0	2	100	0	88	50	0	0	50	1.00
144467--144501	2	17.5	2	100	0	70	51	0	0	48	1.00
149319--149355	19	2.1	19	85	10	51	35	29	21	13	1.92
150702--150743	22	2.0	23	86	13	63	19	16	40	23	1.91
151296--151338	18	2.4	19	80	7	54	46	0	0	53	1.00
151411--151510	53	1.9	51	84	8	130	56	1	0	43	1.06
152097--152212	53	2.2	53	84	6	155	50	0	2	46	1.21
152187--152219	15	2.2	15	89	10	50	60	0	0	39	0.97
153064--153178	53	2.2	52	83	7	144	49	0	2	46	1.21
153131--153197	16	4.5	15	72	18	50	49	1	0	49	1.10
152085--154008	966	2.0	967	99	0	3775	38	11	12	37	1.79
164989--165053	22	2.9	22	84	6	78	46	0	0	53	1.00
165148--165236	9	9.8	9	71	18	60	52	0	1	46	1.07
165155--165240	5	17.6	5	71	17	56	52	0	0	47	1.00
165144--165184	21	2.0	20	90	4	64	58	0	2	39	1.11
165281--165343	26	2.3	28	84	10	78	39	1	1	57	1.18
165351--165434	25	3.9	19	73	22	60	55	0	0	44	0.99
165400--165457	9	6.0	9	79	18	55	53	0	0	46	1.00
165413--165516	35	3.0	33	81	13	120	49	0	0	50	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165361--165516	25	6.7	23	70	19	94	51	0	0	47	1.05
165407--165504	22	4.5	22	75	15	71	51	0	0	48	1.00
165407--165501	5	17.8	5	72	12	57	51	0	0	48	1.00
165348--165516	6	28.3	6	68	21	83	52	0	0	47	1.04
166806--166849	20	2.3	19	85	14	56	72	2	0	25	0.96
166824--166880	18	2.8	20	80	17	55	64	0	3	31	1.10
167121--167154	12	2.8	12	86	4	50	52	0	2	44	1.16
167303--167352	25	2.0	25	88	3	75	44	2	4	50	1.32
168055--168113	21	2.9	20	76	16	59	49	5	1	44	1.34
168382--168413	14	2.3	14	94	0	55	34	0	9	56	1.32
168479--168519	22	1.9	21	90	5	64	60	0	0	39	0.96
168908--168946	20	1.9	20	89	5	60	48	0	2	48	1.15
169525--169584	26	2.3	26	88	8	86	50	0	0	50	1.00
169532--169602	16	4.4	16	83	10	76	50	0	0	49	1.00
169752--169805	16	3.4	16	73	0	54	38	5	3	51	1.43
170362--170411	14	3.4	14	76	17	57	66	0	0	34	0.92
171835--171927	24	4.0	23	74	16	77	52	0	0	47	1.00
171853--171930	33	2.3	34	84	10	106	50	0	0	50	1.00
171855--171927	11	6.4	12	76	17	59	49	0	0	50	1.00
172337--172365	14	2.0	15	93	6	51	51	0	0	48	1.00
172391--172442	19	2.9	17	73	15	52	51	0	0	48	1.00
172376--172447	12	6.5	11	69	16	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173042--173079	2	20.0	2	89	10	62	47	0	0	52	1.00
173484--173527	21	2.1	22	79	12	56	40	2	0	56	1.11
173545--173573	13	2.2	13	100	0	58	68	0	6	24	1.13
173801--173857	16	3.5	16	75	20	55	59	0	0	40	0.97
173802--173869	17	4.1	17	76	17	63	55	0	0	44	0.99
174568--174621	26	2.1	26	82	6	65	53	0	1	44	1.11
175150--175209	23	2.6	22	84	10	75	46	0	0	53	1.00
175154--175212	25	2.4	24	81	16	68	47	0	0	52	1.00
175558--175596	2	20.0	2	84	5	53	48	5	0	46	1.24
179014--179042	3	9.7	3	100	0	58	68	0	0	31	0.89
179074--179157	6	14.7	6	74	21	65	65	0	0	34	0.93
179078--179155	15	5.4	15	79	14	85	66	0	0	33	0.92
179077--179189	53	2.1	55	82	9	135	63	0	0	35	1.01
179135--179208	23	3.1	24	78	7	80	55	2	1	40	1.22
180612--180654	20	2.0	21	86	8	61	44	0	4	51	1.22
180926--180986	20	3.0	21	65	13	54	42	8	0	49	1.32
181280--181314	2	17.5	2	93	0	61	48	0	2	48	1.16
182029--182067	18	2.1	18	85	9	51	46	0	2	51	1.14
182548--182590	2	22.0	2	95	4	79	51	0	0	48	1.00
183287--183325	20	2.0	20	90	10	62	51	0	5	43	1.24
184771--184804	14	2.3	15	90	5	52	41	2	0	55	1.15
186461--186515	16	3.3	16	82	17	60	40	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186890--186929	11	3.3	12	82	10	55	35	0	0	65	0.93
190531--190577	17	2.8	17	75	12	53	53	0	0	46	1.00
190474--190580	36	3.1	36	75	9	89	52	0	0	46	1.06
193927--193979	20	2.6	20	81	3	61	37	0	1	60	1.08
194919--194959	17	2.4	17	87	0	55	39	0	2	58	1.11
196669--196736	22	2.7	27	82	13	83	60	0	2	36	1.12
196669--196736	27	2.8	25	74	22	63	60	0	2	36	1.12
196690--196735	11	4.3	11	80	2	58	60	0	4	34	1.16
199699--199740	16	2.6	16	82	17	52	38	0	0	61	0.96
199721--199784	22	3.0	22	71	13	53	39	1	0	59	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14