genome.fa.s230.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685220--685401	46	4.0	45	84	4	226	56	2	3	38	1.28
685220--685401	91	2.0	91	88	3	269	56	2	3	38	1.28
690163--690196	3	11.3	3	100	0	68	35	0	0	64	0.94
690582--690620	9	4.2	9	83	3	51	33	2	0	64	1.08
691082--691117	16	2.2	16	90	0	54	16	8	16	58	1.61
692323--692386	23	2.9	23	77	13	71	43	0	0	56	0.99
692333--692395	13	4.4	14	75	15	58	41	0	0	58	0.98
692333--692419	44	2.0	44	80	13	99	44	0	0	55	0.99
692917--692990	23	3.1	23	78	9	69	55	0	0	44	0.99
692917--692972	25	2.4	25	79	8	64	57	0	0	42	0.99
692933--692991	22	2.6	22	84	7	66	52	0	0	47	1.00
694180--694225	14	3.1	15	87	12	69	54	0	0	45	0.99
697243--697288	16	2.9	16	74	25	53	47	0	0	52	1.00
697387--697460	23	3.3	23	77	5	80	41	0	0	58	0.98
697406--697471	21	3.2	19	83	16	71	40	0	0	59	0.98
698116--698146	9	3.6	9	91	8	55	77	0	0	22	0.77
698109--698148	17	2.4	17	87	12	64	75	0	0	25	0.81
700095--700140	24	2.0	23	91	4	74	47	0	0	52	1.00
700611--700639	2	14.5	2	100	0	58	0	51	0	48	1.00
703969--704015	24	2.0	24	86	0	67	63	0	0	36	0.94
704351--704422	8	8.8	8	71	17	58	59	0	0	40	0.97
704346--704429	32	2.6	32	84	5	107	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
704345--704419	18	4.3	19	73	20	74	60	0	0	40	0.97
704345--704416	25	2.8	25	72	16	67	59	0	0	40	0.97
704548--704602	27	2.0	27	89	0	83	32	16	18	32	1.93
704664--704721	18	3.2	18	75	20	57	41	0	0	58	0.98
710045--710093	18	2.7	19	78	9	57	42	0	0	57	0.99
710508--710553	18	2.5	19	86	13	69	63	0	0	36	0.95
710490--710540	27	1.9	26	84	4	66	62	0	0	37	0.95
713489--713991	243	2.1	243	88	0	745	23	32	14	29	1.94
713489--713988	81	6.2	81	89	0	658	23	32	14	29	1.94
716377--716426	14	3.4	15	78	18	52	76	0	22	2	0.89
716374--716430	10	5.4	10	80	17	62	78	0	19	1	0.83
719283--719420	18	8.1	18	65	27	61	61	0	1	36	1.05
719313--719378	19	3.4	19	76	10	71	66	0	1	31	1.01
719297--719378	39	2.2	37	84	8	103	63	0	2	34	1.08
719353--719409	15	3.7	14	74	19	51	59	0	0	40	0.97
719359--719409	15	3.3	15	73	26	52	60	0	0	39	0.97
719384--719431	24	2.0	24	84	8	62	60	2	0	37	1.09
726113--726208	49	2.0	46	87	4	120	37	5	7	50	1.53
726294--726374	33	2.5	33	80	9	94	44	6	2	46	1.41
726845--726871	3	9.0	3	100	0	54	0	33	0	66	0.92
730556--730580	13	1.9	13	100	0	50	48	0	4	48	1.20
732990--733120	15	8.6	15	69	19	60	45	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733006--733060	8	7.1	8	78	15	62	40	0	0	60	0.97
732990--733061	16	4.7	16	75	14	71	43	0	0	56	0.99
732990--733084	21	4.7	20	71	20	72	45	0	0	54	0.99
732990--733071	30	2.7	29	75	20	87	43	0	0	56	0.99
738009--738213	50	4.1	50	81	0	257	30	18	19	32	1.95
738005--738213	100	2.1	100	88	0	310	30	17	19	33	1.95
738247--738406	50	3.2	49	78	3	158	31	15	17	35	1.91
739282--739401	11	10.9	11	70	20	58	60	0	3	35	1.13
739337--739390	16	3.3	16	79	5	54	64	0	0	35	0.94
739286--739390	28	3.7	29	73	19	80	62	0	3	33	1.13
739337--739418	33	2.5	33	84	7	98	58	0	0	41	0.98
739642--739666	12	2.1	12	100	0	50	40	8	28	24	1.83
744070--744108	2	19.0	2	94	5	69	48	0	48	2	1.15
746267--746295	14	2.1	14	100	0	58	20	0	41	37	1.53
749175--749226	21	2.4	22	84	15	72	53	0	1	44	1.11
753975--754002	2	14.0	2	100	0	56	50	0	0	50	1.00
754910--754961	22	2.4	22	82	17	72	32	1	1	63	1.16
758413--758449	15	2.2	18	86	13	53	29	0	2	67	1.04
758695--758732	3	12.7	3	88	0	58	63	2	0	34	1.09
759061--759111	19	3.0	17	81	15	61	43	0	0	56	0.99
761084--761125	17	2.4	18	88	4	59	40	0	7	52	1.29
761093--761135	18	2.5	17	82	14	52	46	2	6	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762593--762620	2	14.0	2	100	0	56	50	0	0	50	1.00
762949--763004	29	2.0	28	82	3	67	51	0	0	48	1.00
762976--763026	21	2.5	21	79	17	63	54	0	0	45	0.99
763839--763903	18	3.1	22	75	24	77	50	0	1	47	1.10
763839--763903	22	3.1	21	75	20	73	50	0	1	47	1.10
763904--763948	18	2.6	17	89	3	63	46	2	2	48	1.26
764227--764271	16	2.6	19	76	20	53	48	0	0	51	1.00
767508--767549	2	21.0	2	100	0	84	50	0	0	50	1.00
767693--767745	22	2.4	23	84	15	76	58	0	0	41	0.98
767708--767768	27	2.2	28	82	8	81	63	0	0	36	0.94
768116--768171	29	2.0	28	82	3	67	51	0	0	48	1.00
768143--768193	21	2.5	21	79	17	63	54	0	0	45	0.99
768953--768995	19	2.2	20	91	4	70	51	0	0	48	1.00
770628--770679	19	2.8	19	82	2	61	63	0	0	36	0.95
770588--770663	27	2.8	26	72	16	66	55	0	1	43	1.08
771413--771443	13	2.4	13	94	0	53	58	3	0	38	1.15
771809--771848	14	2.9	14	81	3	55	52	0	0	47	1.00
771771--771852	31	2.5	34	79	18	95	47	1	0	51	1.08
771823--771862	20	2.0	20	85	4	55	57	2	2	37	1.26
773653--773677	9	2.8	9	100	0	50	24	0	44	32	1.54
774227--774263	2	18.5	2	100	0	74	51	0	48	0	1.00
774949--774981	17	1.9	17	93	0	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774923--774977	25	2.2	25	83	6	67	34	0	1	63	1.05
775195--775293	27	3.8	25	74	12	76	34	0	2	63	1.06
775231--775286	21	2.7	21	81	13	71	42	0	0	57	0.99
775243--775314	27	2.7	28	83	12	91	45	0	0	54	0.99
782621--782698	36	2.2	37	86	11	110	55	2	0	42	1.13
782628--782703	16	4.4	16	75	14	62	53	2	0	43	1.14
783060--783102	21	2.0	21	86	4	59	53	0	2	44	1.13
783330--783392	32	2.0	32	90	6	101	41	0	1	57	1.08
783349--783402	25	2.2	25	86	3	74	40	0	1	57	1.09
783327--783400	17	4.4	17	70	17	57	41	0	1	56	1.07
784868--784947	34	2.4	34	95	0	142	41	20	8	30	1.82
787589--787623	16	2.2	16	89	0	52	37	2	2	57	1.29
787595--787652	16	3.6	16	78	0	62	39	8	5	46	1.57
787723--787747	2	12.5	2	100	0	50	48	0	0	52	1.00
787902--787933	15	2.0	17	88	11	50	71	0	0	28	0.86
792577--792601	2	12.5	2	100	0	50	48	0	0	52	1.00
792719--792756	12	3.2	12	82	17	53	34	0	0	65	0.93
792713--792756	22	2.0	23	90	4	72	36	0	0	63	0.95
792713--792757	11	4.1	11	83	16	58	37	0	0	62	0.96
792718--792762	22	2.0	22	87	8	65	42	0	0	57	0.98
794048--794091	18	2.4	19	80	3	54	40	0	6	52	1.28
794776--794858	17	5.1	17	70	26	65	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794742--794813	28	2.6	30	78	14	82	51	0	1	47	1.09
794791--794863	13	5.5	13	72	18	60	53	0	0	46	1.00
794782--794877	45	2.1	46	94	5	169	52	0	0	47	1.00
794812--794873	13	5.3	12	71	24	53	51	0	0	48	1.00
794986--795028	21	2.2	19	88	12	61	48	0	0	51	1.00
796122--796166	19	2.3	19	84	7	54	44	0	2	53	1.13
796588--796623	6	6.0	6	96	0	63	0	0	36	63	0.94
796590--796630	18	2.3	18	86	0	55	0	2	39	58	1.11
803429--803476	22	2.1	23	92	3	80	64	0	2	33	1.05
803442--803479	11	3.4	11	85	7	58	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14