genome.fa.s230.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204635--204715	30	2.8	29	84	5	101	40	1	1	56	1.15
204618--204712	30	3.2	29	77	17	97	40	1	1	57	1.12
204679--204737	23	2.6	23	84	7	68	44	1	1	52	1.21
204685--204737	22	2.3	23	83	6	63	43	1	1	52	1.23
207709--207763	13	4.2	13	79	11	58	49	0	0	50	1.00
210849--210896	23	2.0	23	84	12	60	22	0	2	75	0.91
211754--211798	16	2.8	16	86	6	56	35	2	6	55	1.38
211893--211937	21	2.0	23	91	8	76	53	0	0	46	1.00
213425--213458	17	1.9	17	88	5	50	55	0	0	44	0.99
213386--213444	29	2.0	29	80	6	66	49	1	0	49	1.11
215999--216054	22	2.6	23	81	16	66	53	0	0	46	1.00
215999--216102	21	5.0	22	73	18	80	53	0	0	45	1.06
216056--216110	12	4.2	13	76	21	60	54	1	0	43	1.10
216303--216387	16	5.1	16	66	20	50	52	1	0	45	1.08
222841--222869	14	2.1	14	100	0	58	51	6	6	34	1.55
222861--222901	18	2.2	18	87	12	57	51	0	9	39	1.35
222865--222912	24	2.0	25	87	4	71	50	0	12	37	1.41
224796--224824	2	14.5	2	100	0	58	51	0	0	48	1.00
225513--225549	18	2.1	18	89	0	56	35	16	32	16	1.91
225676--225704	2	14.5	2	100	0	58	51	0	48	0	1.00
227975--228038	31	2.1	31	100	0	128	28	15	21	34	1.94
232700--232839	69	2.0	70	92	2	237	45	10	17	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234816--234863	16	2.9	17	75	9	55	54	4	0	41	1.20
238815--238844	9	3.3	9	100	0	60	43	36	10	10	1.72
240175--240225	22	2.3	22	83	10	68	54	0	1	43	1.11
240130--240250	50	2.4	48	81	10	120	56	1	1	40	1.19
240148--240247	28	3.6	27	75	16	87	59	1	1	39	1.11
240196--240259	28	2.4	26	80	17	62	56	1	3	39	1.25
240585--240625	19	2.2	19	86	4	57	43	0	0	56	0.99
241428--241478	20	2.4	21	75	12	52	47	1	0	50	1.12
243237--243292	12	4.7	12	82	6	60	53	0	0	46	1.00
245120--245150	16	1.9	16	93	0	53	41	0	3	54	1.16
251635--251660	11	2.4	11	100	0	52	19	23	19	38	1.93
257322--257402	38	2.1	39	95	2	146	67	3	11	17	1.35
258099--258168	4	17.2	4	73	8	61	80	0	20	0	0.72
258099--258170	8	8.9	8	80	8	74	80	0	19	0	0.71
258113--258170	9	6.0	9	74	21	55	82	0	17	0	0.66
258452--258514	4	16.2	4	77	9	60	79	0	20	0	0.73
258458--258510	25	2.0	25	85	7	70	81	0	18	0	0.70
258798--258867	4	17.2	4	73	8	61	80	0	20	0	0.72
258798--258869	8	8.9	8	80	8	74	80	0	19	0	0.71
258812--258869	9	6.0	9	74	21	55	82	0	17	0	0.66
258023--259407	699	2.0	682	93	3	2391	39	4	13	43	1.64
258023--259407	346	4.0	350	93	4	2308	39	4	13	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259154--259200	21	2.1	23	84	7	62	76	0	23	0	0.78
259152--259201	24	2.0	24	84	3	64	76	0	24	0	0.80
260498--260558	24	2.6	25	75	19	67	19	0	14	65	1.27
261482--261520	19	2.0	20	90	5	62	35	0	0	64	0.94
261454--261567	51	2.2	53	82	13	132	43	0	0	55	1.05
261797--261842	22	2.0	23	83	8	58	60	0	0	39	0.97
266827--266871	21	2.1	22	84	12	58	48	0	0	51	1.00
267377--267421	22	2.1	21	80	8	56	53	0	0	46	1.00
267420--267445	4	6.5	4	100	0	52	23	0	0	76	0.78
267809--267892	29	2.9	30	74	10	77	58	0	2	39	1.11
272232--272264	2	16.5	2	100	0	66	51	0	0	48	1.00
273488--273543	14	4.1	14	74	4	51	51	1	0	46	1.11
274973--275046	24	2.8	27	78	17	84	41	0	0	58	0.98
275744--275770	4	6.8	4	100	0	54	77	0	0	22	0.76
277057--277107	21	2.3	23	86	10	70	56	1	0	41	1.10
277076--277115	21	1.9	21	89	0	62	57	0	0	42	0.98
277101--277161	23	2.6	23	80	17	72	70	0	0	29	0.88
277490--277517	3	9.3	3	100	0	56	64	0	0	35	0.94
277443--277507	31	2.1	31	82	8	78	53	0	3	43	1.16
280525--280601	37	2.0	40	85	7	106	45	0	0	54	0.99
281005--281098	37	2.7	35	80	8	109	52	1	2	44	1.20
282153--282207	15	3.4	16	74	20	60	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282155--282240	37	2.5	35	82	14	106	55	0	0	44	0.99
282178--282258	18	4.2	21	67	28	56	58	0	1	40	1.06
282183--282237	16	3.1	16	80	19	65	58	0	0	41	0.98
282544--282594	22	2.3	23	83	10	70	47	0	0	52	1.00
282544--282613	22	3.1	23	80	12	65	45	0	0	54	0.99
282586--282660	16	4.8	16	79	14	86	44	0	1	54	1.08
282541--282660	31	4.0	29	76	18	97	45	0	0	53	1.06
282634--282682	15	3.5	15	76	21	61	42	0	0	57	0.99
282614--282665	15	3.6	14	80	16	61	42	0	1	55	1.10
287319--287366	22	2.2	22	85	7	62	72	0	0	27	0.84
287332--287365	16	2.1	16	89	10	52	70	0	0	29	0.87
287298--287366	33	2.1	33	81	13	79	69	1	0	28	0.97
287783--287842	24	2.7	22	80	10	70	50	0	1	48	1.11
288456--288488	14	2.2	15	84	15	50	60	3	0	36	1.12
288462--288488	14	1.9	14	100	0	54	62	0	0	37	0.95
293788--293833	17	2.7	17	86	0	56	73	0	0	26	0.83
295577--295604	7	4.0	7	100	0	56	42	0	0	57	0.99
295580--295623	23	1.9	23	85	0	61	38	0	0	61	0.96
295677--295747	35	2.1	34	89	2	106	36	19	2	40	1.67
296212--296262	14	3.6	14	77	15	59	29	3	1	64	1.22
296556--296617	20	3.0	20	77	15	63	29	0	1	69	0.98
296573--296638	23	2.9	23	80	12	66	31	0	1	66	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296592--296653	29	2.1	29	91	5	99	33	0	0	66	0.92
296589--296642	11	5.3	11	80	13	62	35	0	0	64	0.94
296592--296642	5	10.2	5	78	16	52	35	0	0	64	0.94
296589--296645	23	2.4	23	83	11	71	35	0	0	64	0.93
296558--296653	13	6.8	13	73	20	70	31	0	1	67	0.97
301267--301352	26	3.4	27	78	12	85	31	9	12	46	1.74
302771--302803	12	2.6	13	90	4	50	39	0	0	60	0.97
305199--305284	16	5.2	16	71	8	64	52	6	4	36	1.49
305291--305347	22	2.5	22	73	18	55	54	3	3	38	1.35
305341--305372	16	1.9	17	93	6	57	62	6	0	31	1.20
305637--305683	2	23.5	2	91	8	78	51	0	2	46	1.13
306950--306999	25	2.0	26	84	4	66	62	0	0	38	0.96
310384--310687	76	4.0	76	99	0	599	53	15	13	17	1.73
311476--311820	175	2.0	176	95	0	629	33	13	20	31	1.92
313206--313245	18	2.2	18	86	8	55	42	0	5	52	1.23
313266--313291	12	2.2	12	100	0	52	30	0	0	69	0.89
314896--314940	18	2.5	20	75	20	53	55	0	0	44	0.99
314928--314972	17	2.5	17	85	7	54	51	0	0	48	1.00
314890--314972	19	4.7	18	73	13	57	53	0	0	46	1.00
316604--316688	32	2.6	32	83	12	102	45	1	0	52	1.08
318904--318934	4	7.8	4	92	0	53	51	19	0	29	1.47
322835--322891	15	3.9	14	73	22	55	73	0	3	22	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324444--324475	12	2.6	12	95	5	55	71	0	0	28	0.86
324779--324822	4	11.0	4	95	0	79	22	0	2	75	0.92
325724--325775	25	2.1	25	81	0	59	61	0	0	38	0.96
326539--326598	21	2.9	21	84	0	75	36	25	1	36	1.66
329921--329945	1	25.0	1	100	0	50	0	0	0	100	0.00
330867--330915	25	2.0	23	88	11	71	63	0	0	36	0.95
330903--330991	14	5.9	14	74	18	63	48	0	0	51	1.00
330938--330990	21	2.6	21	78	21	67	47	0	0	52	1.00
331740--331802	24	2.7	25	74	20	64	49	0	0	50	1.00
332277--332335	24	2.5	25	86	8	79	33	0	1	64	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14