genome.fa.s230.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457412--457465	20	2.7	20	83	13	67	38	0	1	59	1.08
457435--457474	20	2.0	20	90	0	62	37	2	0	60	1.11
457670--457712	21	2.2	20	87	8	61	53	0	0	46	1.00
462180--462229	25	2.0	25	84	0	64	42	2	0	56	1.11
462299--462340	15	2.6	17	85	11	61	76	0	2	21	0.90
463468--463513	17	2.8	17	83	3	58	63	0	0	36	0.95
463581--463639	30	2.0	30	90	3	93	57	0	0	42	0.98
463595--463639	14	2.9	17	71	21	53	62	0	0	37	0.96
463851--463895	22	2.0	22	95	0	81	37	11	8	42	1.72
464012--464055	20	2.2	20	84	8	54	43	4	0	52	1.22
465158--465229	28	2.4	29	82	17	87	65	2	0	31	1.07
465180--465293	35	3.4	34	78	17	121	64	0	0	34	0.99
465180--465335	18	8.2	19	69	16	74	63	0	0	35	1.04
465224--465269	21	2.1	22	88	4	67	65	0	0	34	0.93
465180--465342	8	17.3	10	68	17	61	63	0	0	34	1.03
465156--465339	99	1.9	98	82	11	232	64	1	0	34	1.05
465790--465868	37	2.1	37	81	4	88	51	0	1	46	1.08
465794--465838	24	1.9	23	86	4	63	53	0	2	44	1.13
466381--466487	56	1.9	54	85	10	146	22	7	18	51	1.71
466381--466460	28	2.9	28	84	0	115	22	8	17	51	1.73
466468--466513	24	1.9	24	91	8	76	17	8	28	45	1.78
466973--467010	17	2.2	17	95	0	67	21	13	31	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466783--467249	256	1.8	255	98	0	907	28	17	23	29	1.97
469315--469360	21	2.1	22	84	4	58	30	19	30	19	1.97
471211--471263	19	2.8	19	97	0	97	11	15	37	35	1.83
471283--471365	28	3.0	28	96	0	148	20	10	19	49	1.78
471283--471389	56	1.9	54	83	10	137	20	9	20	49	1.76
471370--471415	24	1.9	24	91	8	76	17	8	28	45	1.78
471818--471850	16	2.1	16	88	11	50	6	27	12	54	1.60
474968--475015	20	2.4	20	82	0	51	56	0	0	43	0.99
474998--475087	14	6.8	13	66	19	53	65	0	0	34	0.93
475032--475093	14	4.3	14	76	15	63	62	0	0	37	0.95
474993--475079	27	3.1	28	78	13	74	63	0	0	36	0.95
475643--475681	2	19.5	2	100	0	78	51	0	0	48	1.00
476201--476251	13	4.2	12	75	12	50	64	1	0	33	1.05
476370--476413	13	3.3	13	81	15	54	61	2	2	34	1.21
476373--476430	18	3.3	18	79	9	57	56	5	1	36	1.32
477283--477324	2	21.0	2	100	0	84	50	0	0	50	1.00
477801--477840	21	1.9	21	90	10	64	40	0	0	60	0.97
486570--486621	22	2.3	22	83	9	61	36	0	0	63	0.95
486665--486731	33	2.0	34	85	8	93	53	1	0	44	1.09
486670--486728	20	2.9	19	71	11	55	54	1	0	44	1.10
487224--487257	18	1.9	18	94	5	61	29	0	0	70	0.87
491929--492027	15	6.1	16	69	24	57	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491929--491984	25	2.2	25	81	9	69	46	0	0	53	1.00
491972--492014	16	2.6	17	75	10	54	34	0	0	65	0.93
491992--492043	27	1.9	27	84	7	70	34	0	0	65	0.93
492720--492755	18	1.9	18	88	5	54	47	0	0	52	1.00
494362--494400	19	2.1	19	85	0	51	51	0	0	48	1.00
494460--494522	23	2.9	21	72	9	54	41	3	0	55	1.16
495711--495799	40	2.2	39	80	9	99	61	0	1	37	1.03
495729--495800	32	2.2	33	85	2	92	59	0	0	40	0.97
495753--495804	18	2.9	18	83	11	54	61	0	0	38	0.96
501367--501422	21	2.5	22	76	15	62	39	0	1	58	1.08
508360--508442	34	2.6	32	85	11	100	48	0	1	50	1.08
509140--509172	16	2.1	16	88	11	50	36	0	3	60	1.12
509141--509244	41	2.5	42	77	11	108	37	1	3	56	1.28
511892--511962	34	2.1	34	94	0	124	28	18	32	21	1.96
514619--514766	74	2.0	74	93	0	251	25	16	25	33	1.96
515770--515808	20	1.9	21	89	5	62	66	0	0	33	0.92
515772--515813	13	3.3	13	77	16	52	66	0	0	33	0.92
515770--515841	25	2.8	26	79	12	69	59	0	0	40	0.97
515796--515874	32	2.5	33	80	11	96	54	0	1	44	1.08
519020--519069	19	2.5	21	83	6	68	34	0	4	62	1.14
519180--519239	30	2.0	30	83	6	77	55	0	15	30	1.41
519332--519397	16	4.2	16	84	9	82	25	0	4	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519332--519397	31	2.1	32	85	5	89	25	0	4	69	1.07
519396--519435	20	2.0	21	95	5	73	50	0	0	50	1.00
519370--519446	20	3.6	19	74	20	64	41	0	0	58	0.98
520837--520907	32	2.2	33	80	14	85	42	0	1	56	1.08
520848--520918	32	2.3	29	81	13	88	42	0	1	56	1.08
521437--521466	16	1.9	15	93	6	51	43	0	0	56	0.99
521436--521483	12	4.2	12	80	20	50	52	0	0	47	1.00
523882--523931	15	2.9	18	65	17	52	20	26	8	46	1.78
524082--524126	2	22.5	2	100	0	90	48	0	0	51	1.00
524863--524891	14	2.0	15	93	6	51	34	0	3	62	1.12
524945--524977	15	2.1	16	94	5	59	60	0	0	39	0.97
527767--527842	20	3.9	20	73	11	77	38	0	1	60	1.05
527811--527868	26	2.2	27	81	3	64	51	0	0	48	1.00
528227--528307	32	2.6	33	84	9	116	55	1	0	43	1.07
528243--528294	14	3.4	14	73	19	50	53	0	0	46	1.00
528250--528304	17	3.4	17	75	25	64	56	0	0	43	0.99
529450--529530	16	5.0	17	72	19	66	55	0	0	44	0.99
535885--535937	2	27.0	2	76	3	54	49	7	0	43	1.31
535898--535936	6	6.5	6	93	0	60	51	10	0	38	1.36
536941--536999	25	2.4	23	72	22	57	66	1	0	32	1.02
537351--537392	18	2.4	17	84	11	57	45	2	0	52	1.13
537358--537436	18	4.1	18	72	16	50	43	0	2	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538590--538651	21	2.8	23	76	16	67	50	1	0	48	1.10
539246--539296	24	2.2	24	89	10	79	49	1	0	49	1.12
540294--540324	2	15.5	2	100	0	62	51	0	0	48	1.00
546426--546637	70	3.0	70	99	0	415	44	20	14	20	1.86
548027--548148	60	2.0	60	95	0	217	31	23	17	27	1.97
548826--548913	35	2.5	36	83	7	110	50	3	1	45	1.26
548882--548939	29	1.9	31	82	6	75	46	1	3	48	1.29
549138--549173	2	18.0	2	100	0	72	50	0	0	50	1.00
549972--549999	3	9.3	3	100	0	56	35	0	0	64	0.94
553940--553966	2	13.5	2	100	0	54	51	0	0	48	1.00
554884--554942	20	3.0	20	73	14	59	57	0	1	40	1.09
555876--555920	21	2.3	19	84	7	54	57	6	0	35	1.25
556451--556475	4	6.2	4	100	0	50	52	24	0	24	1.48
565044--565086	23	1.9	22	85	4	59	53	2	0	44	1.13
565044--565089	12	4.0	12	80	8	51	54	2	0	43	1.12
565616--565722	15	6.6	16	66	24	55	36	0	0	63	0.95
565614--565654	19	2.2	19	95	0	73	26	0	0	73	0.84
566479--566518	8	4.9	8	81	6	53	50	0	0	50	1.00
569024--569061	17	2.3	17	86	4	51	39	2	2	55	1.28
569125--569163	14	2.8	13	81	11	51	48	0	0	51	1.00
569125--569167	15	3.1	15	80	12	56	48	0	0	51	1.00
569630--569682	19	2.8	19	80	8	63	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569767--569804	14	2.6	15	87	4	51	50	0	0	50	1.00
570822--570951	64	2.0	64	100	0	260	50	10	6	33	1.62
571859--571884	13	2.0	13	100	0	52	30	15	15	38	1.88
574341--574414	27	2.7	27	85	6	87	25	32	18	22	1.97
574399--574621	52	4.3	52	78	6	148	29	25	11	33	1.91
574446--574621	52	3.4	51	78	7	192	30	26	11	31	1.91
574604--574680	28	2.8	28	82	7	86	23	35	19	22	1.96
574235--574731	264	1.9	262	86	2	719	28	26	13	32	1.93
576914--576973	29	2.1	29	84	6	77	61	3	3	31	1.28
577201--577243	16	2.9	15	83	10	52	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14