genome.fa.s230.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold230
Parameters: 2 7 7 80 10 50 1000
Length:  2055625

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332294--332351	26	2.2	27	82	14	68	32	0	0	67	0.91
332529--332567	3	13.0	3	100	0	78	33	0	0	66	0.92
333851--333912	17	3.9	15	76	17	54	53	0	0	46	1.00
333907--333963	6	10.2	6	77	11	59	64	0	0	35	0.93
333876--333941	18	3.6	18	75	24	59	57	0	0	42	0.98
333876--333966	27	3.3	27	80	17	91	59	0	0	40	0.97
333906--333971	11	5.9	11	75	8	62	60	0	1	37	1.06
333907--333966	22	2.7	22	84	5	77	63	0	0	36	0.95
335558--335614	29	1.9	30	89	10	91	61	0	0	38	0.96
335605--335694	37	2.4	37	83	9	103	43	2	0	54	1.12
337298--337338	21	2.1	19	86	9	55	41	0	0	58	0.98
338042--338109	26	2.7	26	71	13	63	39	0	0	60	0.97
338050--338106	22	2.6	23	76	21	68	42	0	0	57	0.98
338022--338113	15	6.3	15	69	20	61	40	0	0	59	0.97
338413--338482	22	3.3	21	73	15	63	58	1	0	40	1.07
338638--338663	2	13.0	2	100	0	52	0	50	0	50	1.00
339357--339391	2	17.5	2	100	0	70	51	0	0	48	1.00
344618--344984	196	1.9	196	100	0	734	36	17	14	31	1.90
346899--346931	11	3.1	11	91	4	50	51	0	0	48	1.00
346919--346951	16	2.1	16	94	0	57	60	0	0	39	0.97
347060--347118	22	2.7	23	81	5	68	47	0	1	50	1.11
347046--347112	22	3.0	23	80	4	66	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347454--347494	2	20.5	2	100	0	82	0	51	0	48	1.00
347600--347641	16	2.6	17	79	20	54	14	30	0	54	1.40
347675--347737	18	3.6	18	74	20	53	41	1	0	57	1.08
347670--347757	34	2.5	35	85	7	108	44	1	0	54	1.07
351657--351819	85	1.9	84	85	8	224	39	1	1	56	1.21
351771--351809	9	4.4	9	81	18	55	43	0	0	56	0.99
354167--354213	14	3.1	14	82	17	51	38	0	2	59	1.09
354160--354212	17	3.4	15	80	20	56	37	0	1	60	1.08
354244--354281	17	2.2	18	90	4	60	65	0	0	34	0.93
357126--357160	17	2.1	17	100	0	70	11	8	28	51	1.67
364270--364343	6	12.7	6	76	21	52	58	0	41	0	0.98
364272--364341	30	2.4	29	80	17	83	58	0	41	0	0.98
364267--364343	37	2.0	37	90	5	118	58	0	41	0	0.98
365737--365800	22	2.7	23	78	9	67	42	0	0	57	0.98
365768--365799	13	2.5	13	94	0	55	40	0	0	59	0.97
367827--367878	23	2.3	22	83	3	59	50	0	1	48	1.12
367886--368102	114	1.9	115	83	3	287	39	6	3	51	1.44
367886--368138	114	2.2	113	81	6	276	40	6	2	50	1.42
369340--369393	19	2.9	18	75	8	54	42	3	0	53	1.18
370398--370461	22	2.9	22	74	6	58	54	4	0	40	1.21
370810--370849	2	20.0	2	100	0	80	50	0	0	50	1.00
372026--372071	17	2.6	19	80	10	53	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375733--375774	20	2.2	20	82	4	50	78	2	16	2	0.96
375891--375974	34	2.5	34	81	9	93	57	2	0	40	1.12
375927--375975	25	2.0	25	87	0	71	63	0	0	36	0.95
377635--377679	19	2.3	20	76	7	56	46	0	2	51	1.13
380002--380054	22	2.3	23	84	9	65	33	3	3	58	1.34
380635--380676	19	2.3	19	83	4	50	45	0	0	54	0.99
381991--382023	3	11.0	3	93	0	57	33	0	3	63	1.10
382531--382602	37	1.9	37	81	10	85	41	0	0	58	0.98
382981--383035	11	5.2	11	80	8	60	32	1	0	65	1.03
382982--383033	15	3.4	14	75	17	50	30	1	0	67	1.02
384647--384691	2	22.5	2	90	0	72	0	51	0	48	1.00
389394--389452	2	29.5	2	96	0	109	50	0	1	47	1.11
393325--393541	108	2.0	108	92	0	362	46	11	12	29	1.77
394616--394654	14	2.8	14	85	11	53	30	0	0	69	0.89
394650--394715	12	5.2	13	70	17	50	40	0	1	57	1.08
394752--394804	23	2.2	24	87	9	74	47	1	0	50	1.12
394921--394965	16	2.6	17	82	6	56	51	2	0	46	1.13
395302--395345	2	22.5	2	95	4	81	50	0	0	50	1.00
395841--395909	6	12.0	6	75	14	65	34	2	1	60	1.20
395841--395909	17	4.0	17	75	14	70	34	2	1	60	1.20
395817--395909	11	8.3	11	72	13	73	37	2	1	59	1.17
396778--396810	2	16.5	2	93	0	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399025--399111	24	3.4	25	75	20	83	39	1	0	59	1.05
399019--399121	32	3.2	30	76	17	82	36	1	0	61	1.07
409679--409740	28	2.2	28	83	11	74	41	0	4	53	1.22
416406--416437	14	2.1	16	88	11	50	40	0	0	59	0.97
419162--419268	51	2.1	51	96	0	196	61	13	11	14	1.57
420722--420765	3	14.7	3	100	0	88	68	0	0	31	0.90
420987--421023	15	2.5	15	91	8	58	37	8	0	54	1.30
421320--421373	17	3.3	17	72	25	53	53	3	1	40	1.29
424140--424209	33	2.1	35	89	10	110	54	0	0	45	0.99
426106--426209	29	3.5	30	73	13	101	40	2	1	54	1.26
426303--426354	24	2.1	24	82	10	61	61	3	1	32	1.25
426255--426332	29	2.7	29	80	6	77	61	0	2	35	1.10
426761--426794	10	3.4	10	95	0	59	61	0	5	32	1.20
427423--427460	20	1.9	20	84	10	51	55	0	0	44	0.99
427717--427754	2	19.0	2	100	0	76	50	0	0	50	1.00
428672--428730	29	2.0	30	86	3	84	32	0	5	62	1.17
431004--431039	19	1.9	19	88	5	56	38	5	2	52	1.39
431824--431854	10	3.0	10	90	9	53	32	0	0	67	0.91
431822--431866	18	2.7	16	80	12	54	31	0	0	68	0.89
431839--431882	21	2.0	23	86	8	65	29	0	0	70	0.88
432187--432256	15	4.6	15	76	16	54	40	2	0	57	1.14
432213--432262	8	6.2	8	77	13	50	32	2	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432210--432262	16	3.4	16	78	5	63	33	1	0	64	1.05
432211--432266	15	3.7	15	79	11	53	37	1	0	60	1.07
433650--433686	3	12.3	3	94	0	65	29	0	2	67	1.04
434304--434345	9	4.6	9	80	16	50	50	0	0	50	1.00
434753--434802	26	1.9	26	84	8	66	60	0	6	34	1.21
435785--435812	2	14.0	2	100	0	56	0	50	0	50	1.00
437598--437654	28	2.0	29	96	3	107	50	7	14	28	1.68
439551--439587	11	3.1	12	88	11	58	59	0	0	40	0.97
439551--439588	5	7.8	5	83	16	53	60	0	0	39	0.97
439551--439589	16	2.7	14	88	11	53	61	0	0	38	0.96
439539--439607	24	2.9	24	77	14	72	62	2	0	34	1.10
439603--439681	30	2.8	29	75	17	85	56	0	1	41	1.07
440621--440703	30	2.8	30	76	10	80	42	12	2	43	1.55
440725--440823	51	1.9	52	83	6	130	53	3	5	38	1.38
440756--440803	21	2.3	21	85	7	62	60	2	2	35	1.20
441355--441399	22	2.0	22	87	8	65	57	0	0	42	0.98
441898--441942	19	2.2	21	88	11	67	42	0	0	57	0.98
442374--442401	6	4.7	6	100	0	56	46	0	0	53	1.00
442435--442477	21	2.0	21	86	8	61	37	0	2	60	1.10
442587--442627	17	2.6	16	88	11	66	43	0	2	53	1.13
442617--442702	29	3.1	29	62	21	76	39	6	6	46	1.58
442609--442709	53	1.9	53	97	0	193	40	5	6	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443842--443903	30	2.1	30	90	0	97	51	1	9	37	1.45
443842--443914	30	2.4	30	84	4	85	49	2	9	38	1.50
444762--444793	7	4.6	7	96	0	55	43	9	15	31	1.78
445474--445558	22	3.7	23	76	19	88	63	0	0	36	0.95
446400--446431	3	10.7	3	93	0	55	3	31	0	65	1.08
448152--448179	11	2.5	11	100	0	56	75	0	0	25	0.81
448286--448343	25	2.3	25	75	0	62	36	0	1	62	1.06
448716--448758	16	2.6	16	81	3	50	58	2	2	37	1.24
448734--448776	22	1.9	23	81	13	54	65	2	2	30	1.18
457310--457371	21	2.9	21	76	21	58	51	1	0	46	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14