genome.fa.s2504.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2504
Parameters: 2 7 7 80 10 50 1000
Length:  1293507

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 734 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356854--357093	55	4.3	55	83	6	304	29	26	20	23	1.99
357117--357269	61	2.5	61	86	5	202	24	27	19	28	1.99
357264--357424	42	3.7	44	81	11	154	18	26	14	40	1.90
357259--357424	87	1.9	85	80	10	194	18	25	14	41	1.88
358055--358110	21	2.7	21	97	0	103	33	21	12	32	1.91
358147--358203	20	2.8	20	91	0	87	26	15	15	42	1.87
360620--360714	28	3.4	28	82	5	104	26	29	15	28	1.96
360640--360902	107	2.4	105	76	10	273	26	26	17	30	1.97
360540--360822	135	2.1	135	91	3	455	25	25	17	31	1.97
360747--360823	28	2.8	28	86	4	102	20	31	23	24	1.98
360775--360948	79	2.2	79	91	0	276	28	27	14	29	1.95
360888--361004	51	2.3	51	86	2	164	31	28	9	30	1.88
360807--361152	122	2.8	123	80	11	382	28	26	13	31	1.93
365130--365154	13	1.9	13	100	0	50	32	16	16	36	1.90
365786--365867	22	3.7	23	83	8	91	32	25	0	41	1.56
371923--371965	21	2.0	21	100	0	86	44	9	13	32	1.76
375077--375114	15	2.5	15	86	0	58	31	13	2	52	1.54
376987--377024	18	2.1	18	100	0	76	42	26	0	31	1.56
377719--377774	21	2.7	21	100	0	112	32	10	21	35	1.88
377886--377952	34	2.0	33	85	2	89	26	14	13	44	1.83
380405--380480	27	2.8	27	90	6	109	23	32	21	22	1.98
380463--380680	52	4.3	51	76	7	201	30	27	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380299--380680	51	7.4	53	70	13	206	30	26	11	31	1.92
380311--380790	259	1.9	259	91	1	793	28	27	12	30	1.93
384810--384911	53	2.0	52	84	7	136	43	10	18	27	1.83
384963--385226	131	2.0	130	83	5	336	35	10	23	29	1.89
385249--385285	13	2.5	16	87	12	53	27	0	2	70	1.01
396197--396251	27	2.1	26	89	3	83	85	5	9	0	0.74
397218--397461	55	4.4	55	83	7	287	27	27	21	22	1.99
397267--397353	26	3.3	26	62	17	61	25	32	20	21	1.98
397502--397687	61	3.1	61	77	2	205	25	23	18	32	1.97
398559--398621	13	5.3	13	73	21	66	30	15	12	41	1.85
398541--398641	33	3.1	33	88	2	150	29	15	12	41	1.85
398541--398609	20	3.8	19	73	25	69	27	15	14	42	1.86
398603--398641	20	2.0	20	94	0	69	33	15	10	41	1.81
401019--401100	28	3.0	26	82	7	74	20	25	21	31	1.98
401050--401120	28	2.5	28	95	0	124	22	25	21	30	1.98
401047--401307	107	2.5	106	79	4	310	24	26	18	31	1.97
400945--401227	135	2.1	135	92	0	467	23	25	19	31	1.98
401154--401227	28	2.6	28	84	0	94	21	31	22	24	1.99
401186--401341	78	2.0	79	89	1	242	28	26	13	31	1.94
403676--403704	4	7.2	4	100	0	58	24	0	0	75	0.80
413536--413586	14	3.8	13	87	7	75	88	7	3	0	0.63
413540--413591	25	2.2	22	83	13	59	86	7	5	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413536--413591	13	4.3	12	81	16	67	87	7	5	0	0.67
413537--413594	28	2.1	28	87	6	82	86	6	6	0	0.72
414563--414779	54	3.9	55	87	4	328	27	26	22	23	1.99
414725--414903	100	1.8	95	83	12	238	25	28	20	26	1.99
414825--414976	61	2.5	60	88	4	216	23	26	21	28	1.99
414974--415111	42	3.1	45	81	8	149	17	25	13	43	1.86
415727--415782	21	2.7	21	94	0	94	35	21	12	30	1.90
415819--415975	20	7.8	20	72	18	112	26	17	14	41	1.88
418239--418522	135	2.1	135	88	3	430	25	27	18	28	1.98
418454--418522	28	2.5	27	83	9	86	23	34	17	24	1.96
418339--418598	107	2.4	107	78	8	255	26	27	17	28	1.97
418474--418635	79	2.1	79	91	0	261	28	27	13	30	1.94
418587--418699	51	2.2	51	85	6	158	31	26	9	31	1.89
418508--418890	122	3.1	123	83	8	411	28	26	12	32	1.92
423020--423045	13	2.0	13	100	0	52	38	15	15	30	1.88
425262--425306	21	2.1	21	84	8	56	53	4	20	22	1.63
428203--428228	13	2.0	13	100	0	52	38	15	15	30	1.88
429071--429100	13	2.3	13	100	0	60	36	13	16	33	1.88
429048--429117	33	2.1	33	86	0	95	34	18	12	34	1.89
429830--429911	22	3.7	23	83	8	91	32	25	0	41	1.56
435980--436019	21	1.9	21	100	0	80	37	10	17	35	1.83
439131--439168	15	2.5	15	86	0	58	31	13	2	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441900--441966	34	2.0	33	85	2	89	26	14	13	44	1.83
444306--444436	51	2.5	53	84	8	178	31	25	10	32	1.90
444451--444668	52	4.3	51	76	7	192	30	26	11	32	1.91
444369--444519	82	1.9	81	86	4	216	28	27	14	29	1.95
444656--444724	28	2.5	28	86	9	88	24	28	17	28	1.97
448798--448899	53	2.0	52	84	7	136	43	10	18	27	1.83
448951--449215	131	2.0	131	84	4	347	36	10	23	29	1.89
449237--449273	13	2.5	16	87	12	53	27	0	2	70	1.01
452333--452363	13	2.4	13	94	0	53	35	16	12	35	1.87
452317--452384	33	2.1	33	86	10	95	33	13	16	36	1.87
460987--461043	19	2.9	19	86	2	78	33	15	15	35	1.90
461072--461139	32	2.1	33	89	8	104	33	11	17	36	1.86
461099--461137	19	2.0	20	90	5	62	38	10	15	35	1.81
469271--469371	51	2.0	51	96	0	184	33	21	13	30	1.93
471136--471226	44	2.1	44	97	0	173	39	24	8	27	1.84
478690--478730	14	2.9	14	96	0	73	46	0	14	39	1.45
478709--479385	266	2.6	266	94	0	1180	39	17	15	27	1.90
479189--479236	20	2.5	19	77	16	53	70	12	12	4	1.29
490960--490994	18	1.9	18	94	0	61	31	8	5	54	1.54
494078--494144	33	2.0	33	88	0	98	34	11	13	40	1.81
494098--494122	13	1.9	13	100	0	50	36	16	16	32	1.90
494220--494339	52	2.3	52	97	0	222	35	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494346--494662	71	4.5	70	84	8	378	19	31	11	36	1.88
494346--494626	106	2.6	106	87	7	392	20	32	11	35	1.88
494665--494771	33	3.2	34	92	5	175	29	35	14	19	1.92
494771--495866	49	22.9	49	84	6	1415	24	25	17	32	1.97
494866--495813	92	10.0	92	92	4	1464	24	25	18	32	1.97
494766--495811	190	5.5	186	91	4	1628	24	25	17	31	1.97
494771--495857	380	2.9	381	93	2	1810	24	25	18	32	1.97
496768--496834	33	2.0	33	88	0	98	34	11	13	40	1.81
496788--496812	13	1.9	13	100	0	50	36	16	16	32	1.90
496909--497029	52	2.3	52	95	0	215	34	17	18	29	1.94
497035--497351	35	9.0	34	83	11	347	19	32	11	36	1.87
497039--497351	71	4.4	72	84	8	378	19	32	11	36	1.88
497035--497315	106	2.6	106	87	7	392	19	33	11	35	1.87
497354--497460	33	3.2	34	92	5	175	29	35	14	19	1.92
497460--498659	49	24.9	49	85	4	1584	24	25	17	32	1.97
497460--498659	98	12.4	98	90	4	1836	24	25	17	32	1.97
497448--498603	190	6.0	187	89	5	1669	24	25	17	32	1.97
499690--499810	52	2.3	52	97	0	224	34	18	18	28	1.94
506734--506775	7	6.1	7	88	5	68	85	14	0	0	0.59
506735--506776	20	2.0	22	90	9	70	85	14	0	0	0.59
507016--507047	16	2.0	16	93	0	55	84	9	6	0	0.78
507975--508119	31	4.7	31	88	6	206	25	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507972--508191	93	2.3	93	83	7	275	23	30	15	30	1.96
507975--508138	62	2.6	62	86	6	226	25	29	17	28	1.97
508130--508810	34	19.6	34	87	6	867	20	32	11	34	1.89
508130--508810	105	6.5	104	89	5	922	20	32	11	34	1.89
508817--508923	33	3.2	34	92	5	175	29	35	14	19	1.92
508923--510116	49	24.9	49	84	5	1550	24	25	17	32	1.97
508923--510116	98	12.4	98	91	4	1818	24	25	17	32	1.97
508923--510116	190	6.2	190	91	2	1869	24	25	17	32	1.97
511016--511073	20	3.0	20	84	2	73	31	10	12	46	1.74
511147--511267	52	2.3	52	97	0	224	34	18	18	28	1.94

Tables:   1   2   3   4   5   6   7