genome.fa.s279.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold279
Parameters: 2 7 7 80 10 50 1000
Length:  1516008

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414812--1414836	2	12.5	2	100	0	50	0	0	48	52	1.00
1418121--1418152	15	2.2	15	94	5	57	0	9	0	90	0.45
1418548--1418590	14	3.0	14	87	12	61	32	0	0	67	0.91
1421389--1421439	20	2.6	20	87	3	68	27	13	19	39	1.90
1421472--1421524	20	2.6	21	84	3	72	28	16	15	39	1.89
1421512--1421536	13	1.9	13	100	0	50	36	16	16	32	1.90
1421527--1421576	20	2.5	20	96	0	91	30	22	20	28	1.98
1425669--1425726	20	3.0	20	84	2	73	31	10	12	46	1.74
1425765--1425789	13	1.9	13	100	0	50	32	16	16	36	1.90
1425798--1425917	52	2.3	52	94	0	213	35	17	17	30	1.93
1431523--1431655	67	2.0	67	100	0	266	30	19	16	33	1.94
1432595--1432627	2	16.5	2	93	0	57	45	0	3	51	1.16
1432590--1432627	12	3.2	12	92	0	58	42	0	7	50	1.31
1435482--1435541	28	2.1	30	87	6	88	33	1	15	50	1.54
1435524--1435656	58	2.3	57	87	2	194	33	3	11	51	1.53
1435524--1435657	19	7.0	19	74	9	103	34	2	11	51	1.53
1436960--1437151	98	2.0	98	90	3	309	47	7	6	38	1.58
1437482--1437535	20	2.8	20	91	8	85	46	0	0	53	1.00
1437657--1437708	22	2.4	23	84	12	74	42	0	1	55	1.10
1437653--1437724	21	3.5	22	80	12	73	37	2	1	58	1.21
1439262--1439428	39	4.3	39	75	8	112	44	4	10	40	1.57
1439810--1439861	26	2.0	25	82	14	61	57	0	1	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1446563--1446588	6	4.3	6	100	0	52	69	0	0	30	0.89
1447819--1447897	41	1.9	41	87	5	115	54	10	15	20	1.69
1448209--1448322	41	2.8	42	81	2	124	42	14	22	20	1.87
1448724--1448879	40	3.8	40	75	6	145	38	15	19	26	1.92
1448838--1449089	105	2.4	106	80	5	269	42	14	20	22	1.89
1449011--1449089	41	1.9	41	86	0	113	45	16	17	20	1.85
1449011--1449104	41	2.3	41	83	3	100	44	14	19	21	1.86
1449095--1449257	65	2.5	65	83	7	197	42	12	21	22	1.87
1450594--1450681	33	2.7	33	90	0	140	27	12	13	46	1.79
1452331--1452378	3	16.0	3	86	0	69	39	0	31	29	1.57
1452329--1452377	12	4.1	12	92	7	82	42	0	30	26	1.55
1457521--1457546	13	2.0	13	100	0	52	30	15	15	38	1.88
1457501--1457564	32	2.0	33	87	3	94	28	15	14	42	1.86
1457606--1457679	20	3.6	20	78	7	94	31	17	13	37	1.89
1457585--1457679	42	2.3	42	94	1	165	29	17	12	40	1.87
1458232--1458327	48	2.0	48	100	0	192	25	29	8	37	1.85
1460168--1460232	13	5.0	13	94	0	112	35	15	18	30	1.92
1460168--1460231	26	2.5	26	100	0	128	34	15	18	31	1.93
1462286--1462316	15	2.1	15	93	0	53	12	22	16	48	1.80
1466378--1466403	13	2.0	13	100	0	52	30	15	15	38	1.88
1466358--1466421	32	2.0	33	87	3	94	28	15	14	42	1.86
1466463--1466536	20	3.6	20	78	7	94	31	17	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1466442--1466536	42	2.3	42	94	1	165	29	17	12	40	1.87
1467958--1467996	20	2.0	20	100	0	78	20	30	10	38	1.86
1468126--1468178	19	2.9	18	86	5	79	37	11	15	35	1.83
1468230--1468254	13	1.9	13	100	0	50	32	16	16	36	1.90
1468263--1468391	52	2.5	52	94	0	231	35	17	17	28	1.93
1476840--1476884	18	2.3	18	85	11	54	80	0	20	0	0.72
1477750--1477784	17	2.1	17	100	0	70	54	0	11	34	1.37
1478765--1478798	16	2.1	17	88	5	52	55	2	2	38	1.30
1480922--1480978	27	2.1	27	96	0	105	42	7	15	35	1.75
1482156--1482202	19	2.4	19	85	3	58	34	17	14	34	1.90
1482235--1482288	20	2.7	20	82	5	65	31	9	20	38	1.84
1482805--1482896	23	4.1	23	75	10	91	25	9	16	48	1.76
1482811--1482898	44	2.0	44	86	0	122	23	9	15	51	1.72
1484553--1484600	23	2.0	23	88	4	69	35	0	0	64	0.94
1489273--1489305	9	3.8	9	96	4	59	69	0	30	0	0.88
1492219--1492253	18	2.0	17	88	5	52	65	0	0	34	0.93
1492236--1492356	34	3.6	34	72	13	99	52	0	3	44	1.17
1492304--1492388	19	3.9	21	73	22	77	55	0	1	43	1.07
1493364--1493454	28	3.4	27	79	10	80	25	6	21	46	1.76
1493364--1493433	28	2.5	28	84	9	81	24	5	22	47	1.73
1495987--1496032	21	2.1	22	84	4	58	30	19	30	19	1.97
1497918--1498007	28	3.4	27	80	8	87	25	7	21	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1498063--1498108	20	2.3	20	88	0	65	10	50	4	34	1.57
1498571--1498595	13	1.9	13	100	0	50	36	16	16	32	1.90
1498551--1498617	33	2.0	33	88	0	98	34	11	13	40	1.81
1498658--1498682	13	1.9	13	100	0	50	32	16	16	36	1.90
1508234--1508317	42	2.0	44	83	9	111	27	22	22	27	1.99
1508493--1508563	27	2.6	26	86	8	97	18	15	28	38	1.91
1510336--1510442	1	107.0	1	77	0	88	0	1	11	86	0.64
1510336--1510442	18	6.1	17	79	13	119	0	1	11	86	0.64
1510339--1510444	19	5.4	19	80	13	110	0	1	12	85	0.67
1510336--1510444	32	3.4	30	84	12	128	0	1	11	86	0.66
1510347--1510431	25	3.5	24	89	7	127	0	0	11	88	0.52
1510347--1510442	24	4.2	22	78	13	104	0	1	11	87	0.60
1510566--1511278	1	713.0	1	82	0	553	0	1	12	86	0.65

Tables:   1   2   3   4   5   6   7   8   9   10

The End!