genome.fa.s279.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold279
Parameters: 2 7 7 80 10 50 1000
Length:  1516008

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974459--974512	22	2.5	21	84	6	63	68	0	27	3	1.06
975435--975707	141	1.9	143	85	4	383	35	9	11	42	1.75
981734--981798	33	2.0	33	90	0	103	33	20	12	33	1.89
981830--981901	19	3.7	19	90	1	108	36	12	16	34	1.87
985665--985722	19	3.1	19	94	0	107	27	37	8	25	1.85
989223--989292	28	2.5	27	90	4	104	30	21	27	21	1.98
989331--989401	28	2.5	29	84	6	101	26	18	29	25	1.98
989196--989506	107	2.9	106	87	2	435	34	15	24	26	1.94
989435--989505	28	2.6	28	84	6	83	32	21	23	22	1.98
990765--991098	123	2.8	120	84	2	391	28	17	27	26	1.98
990741--991153	61	6.9	61	79	6	342	26	18	27	26	1.98
990929--991177	60	4.4	54	79	8	191	26	19	27	27	1.99
1004709--1005055	107	3.2	104	82	4	365	33	13	25	27	1.93
1004865--1004938	28	2.6	30	75	8	75	28	16	28	27	1.97
1004971--1005045	28	2.7	27	85	4	96	30	20	29	20	1.97
1005636--1005661	10	2.6	10	100	0	52	69	7	0	23	1.14
1010108--1010163	20	2.8	21	86	7	82	33	16	16	33	1.91
1010087--1010163	20	3.9	20	80	14	81	31	14	18	36	1.90
1010430--1010573	54	2.7	54	91	2	227	24	14	15	45	1.83
1010712--1010771	3	21.0	3	77	16	65	33	0	0	66	0.92
1010699--1010772	37	2.0	36	92	2	121	37	0	0	62	0.96
1011259--1011695	208	2.1	210	80	3	506	41	16	24	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011607--1011835	125	1.8	126	83	2	309	44	16	20	17	1.87
1011443--1012127	333	2.1	334	85	3	923	43	17	22	16	1.88
1012102--1012337	85	2.8	84	75	6	208	46	15	21	16	1.84
1011401--1012925	42	36.5	41	74	8	632	42	17	23	16	1.88
1012904--1012959	25	2.2	25	90	0	85	44	17	25	12	1.84
1012929--1013113	42	4.4	43	78	9	159	43	14	25	16	1.86
1013742--1014038	90	3.3	89	81	4	348	31	12	26	28	1.93
1016055--1016153	19	5.8	19	66	26	69	37	13	16	33	1.87
1016056--1016150	32	3.0	32	93	0	154	36	13	16	32	1.88
1016075--1016131	13	3.9	13	74	24	51	36	14	17	31	1.89
1016193--1016218	13	2.0	13	100	0	52	30	15	15	38	1.88
1016751--1016783	11	2.8	12	86	4	50	81	15	3	0	0.80
1018588--1018710	53	2.4	51	84	5	158	32	24	10	32	1.89
1018700--1018770	28	2.5	28	88	4	99	23	38	18	19	1.93
1020679--1020703	13	1.9	13	100	0	50	32	16	16	36	1.90
1020659--1020721	33	1.9	33	87	12	94	30	17	15	36	1.91
1025386--1025585	100	2.0	100	96	0	364	29	20	13	36	1.91
1029586--1029612	13	2.1	13	100	0	54	40	14	14	29	1.86
1032125--1032150	13	2.0	13	100	0	52	30	15	15	38	1.88
1036799--1036829	15	2.1	15	93	0	53	12	22	16	48	1.80
1040897--1040922	13	2.0	13	100	0	52	30	15	15	38	1.88
1040877--1040940	32	2.0	33	84	3	85	29	12	17	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043234--1043321	20	3.9	20	73	25	77	46	11	13	28	1.78
1043206--1043343	50	2.7	51	93	2	233	46	10	15	27	1.78
1046517--1046548	15	2.1	15	100	0	64	71	6	12	9	1.29
1048359--1048414	20	2.8	19	89	5	76	37	16	17	28	1.91
1048484--1048522	13	3.0	13	100	0	78	38	15	15	30	1.88
1050795--1050839	22	2.2	20	84	11	56	11	20	13	55	1.68
1051459--1051578	53	2.3	51	82	5	159	21	16	16	45	1.86
1055289--1055337	21	2.3	20	83	10	62	67	0	20	12	1.22
1055303--1055349	21	2.2	21	92	0	76	57	0	19	23	1.41
1055373--1055414	21	2.0	21	82	17	52	47	19	16	16	1.83
1059719--1059767	20	2.5	20	90	6	73	36	14	20	28	1.92
1068347--1068401	19	2.8	20	88	2	85	30	16	14	38	1.89
1068297--1068397	52	1.9	53	84	6	134	30	16	14	37	1.89
1068446--1068475	13	2.3	13	100	0	60	33	16	13	36	1.88
1068430--1068496	33	2.0	33	91	5	109	32	13	19	34	1.91
1070331--1070366	13	2.8	13	91	0	54	36	16	13	33	1.89
1070447--1070489	21	2.0	21	81	0	50	32	20	4	41	1.73
1071997--1072031	16	2.2	16	89	0	52	14	14	11	60	1.60
1073014--1073038	13	1.9	13	100	0	50	32	20	16	32	1.94
1077494--1077521	13	2.2	13	100	0	56	39	17	14	28	1.89
1077476--1077541	33	2.0	33	88	5	98	39	13	16	30	1.87
1078358--1079206	101	8.4	101	91	0	1329	33	18	26	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079172--1079332	39	3.9	39	77	15	180	26	22	26	24	2.00
1079211--1079386	48	3.9	47	77	15	192	30	19	24	25	1.98
1079125--1079378	86	2.9	87	89	1	384	29	20	25	25	1.99
1079406--1079500	29	3.3	28	81	10	95	18	16	30	33	1.94
1079514--1079566	27	2.0	27	92	0	88	30	15	32	22	1.94
1079534--1079754	34	6.7	34	78	13	246	33	13	34	19	1.90
1079473--1079758	34	8.8	32	75	17	243	32	13	34	19	1.91
1079473--1079754	69	4.3	66	80	14	302	32	13	34	19	1.91
1079637--1079696	27	2.2	27	93	0	102	30	13	36	20	1.90
1079608--1079728	61	2.0	61	90	6	192	33	14	33	19	1.92
1079568--1079758	95	2.0	96	88	5	289	31	13	34	19	1.91
1079473--1079754	129	2.2	129	86	6	392	32	13	34	19	1.91
1079664--1079760	35	2.9	34	78	9	117	32	13	32	20	1.91
1079598--1079787	95	2.0	94	81	8	215	33	14	32	19	1.92
1079739--1079944	31	6.6	31	84	4	229	28	17	30	23	1.97
1079765--1079944	94	1.9	93	88	5	274	30	17	29	22	1.97
1080303--1080369	33	2.0	33	88	0	98	34	11	13	40	1.81
1080323--1080347	13	1.9	13	100	0	50	36	16	16	32	1.90
1080412--1080436	13	1.9	13	100	0	50	32	16	16	36	1.90
1080445--1080565	52	2.3	52	97	0	224	34	18	18	28	1.94
1084461--1084492	16	2.1	15	94	5	55	3	6	0	90	0.53
1088907--1088957	21	2.4	21	75	12	50	35	3	9	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089047--1089137	20	4.6	20	79	15	84	30	16	14	38	1.88
1089182--1089213	13	2.5	13	94	0	55	37	15	9	37	1.80
1094805--1094829	13	1.9	13	100	0	50	36	16	16	32	1.90
1094872--1094969	19	5.8	18	71	28	90	36	17	12	33	1.87
1094867--1094967	32	3.1	32	97	1	184	35	17	11	34	1.87
1094891--1094947	13	3.9	13	76	24	60	33	17	14	35	1.90
1098408--1098462	27	2.0	27	96	0	101	34	21	16	27	1.95
1098881--1098917	13	2.8	13	83	0	56	32	10	16	40	1.83
1099003--1099046	9	4.6	9	78	15	52	27	22	0	50	1.50
1099004--1099065	20	3.0	20	82	13	72	29	24	0	46	1.53
1099004--1099065	21	3.0	21	84	9	74	29	24	0	46	1.53
1101588--1101618	13	2.4	13	100	0	62	32	16	12	38	1.86
1101572--1101641	33	2.1	33	86	5	97	35	12	15	35	1.86
1103806--1104198	153	2.6	153	82	8	467	38	18	13	28	1.89
1106643--1107226	315	1.8	319	81	7	742	42	12	9	35	1.75
1106618--1107217	162	3.8	155	79	10	576	41	12	9	37	1.74
1108010--1108062	12	4.5	12	79	11	56	1	16	1	79	0.92
1109908--1109965	20	3.0	20	87	2	73	34	15	17	32	1.91
1109928--1109965	20	1.9	20	100	0	76	39	10	18	31	1.85
1109994--1110045	20	2.6	20	84	6	61	40	13	15	30	1.86
1112270--1112300	13	2.4	13	94	0	53	35	12	16	35	1.87
1112345--1112417	20	3.7	19	87	7	85	38	17	16	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114698--1114741	22	2.0	22	82	13	54	54	0	15	29	1.42
1114856--1114881	13	2.0	13	100	0	52	38	15	15	30	1.88
1121024--1121089	33	2.0	32	85	11	89	33	18	12	36	1.88
1121139--1121165	13	2.1	13	100	0	54	40	14	14	29	1.86
1122491--1122533	5	8.6	5	84	0	50	60	6	0	32	1.23
1122481--1122535	25	2.2	25	100	0	110	56	14	0	29	1.39
1122481--1122523	15	3.2	15	69	30	51	58	13	0	27	1.37
1122613--1122725	48	2.6	41	73	18	111	61	4	0	33	1.22
1122615--1122995	51	7.8	48	73	15	146	55	4	2	37	1.33
1122613--1122786	89	2.0	89	84	8	230	60	4	1	33	1.25

Tables:   1   2   3   4   5   6   7   8   9   10